Vpg

Euk-Vir

Tomato_mild_mottle_virus

Vpg__YP_009509085__Tomato_mild_mottle_virus__178599

Identity

87.8 mean pLDDT

View cluster (80 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-55

PDB

Domain cluster: rep: VPg__YP_007032443__Cassava_brown_streak_virus__137758__D5-52

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3lo7A01	3.90.1310.10	Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2)	0.55	41.0	3.33e-01	84.9%	78.4%
6sj3B01	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.54	43.0	2.72e-01	92.5%	34.2%
4zudA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.53	36.0	2.41e-01	73.6%	37.9%
7yulA01	1.10.10.2590	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain	0.52	44.0	3.79e-01	96.2%	95.3%
2im9A02	2.30.260.10	Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain	0.52	39.0	2.98e-01	88.7%	78.2%
4g6tB00	6.10.20.120	Special › Helix non-globular › Arc Repressor Mutant, subunit A ›	0.50	34.0	3.23e-01	83.0%	54.9%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
None	—		0.58	47.0	3.30e-01	100.0%	67.6%
3415024	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.58	39.0	2.49e-01	73.6%	34.4%
None	—		0.57	47.0	3.22e-01	100.0%	60.4%
4938876	593.1.1.1 ↗	alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1	0.56	43.0	2.80e-01	90.6%	43.9%
3805156	4099.1.1.0 ↗	a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like	0.56	45.0	3.61e-01	92.5%	61.8%
3926712	5001.1.1.44 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv	0.55	38.0	2.44e-01	71.7%	54.5%
3925962	5001.1.1.44 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv	0.54	36.0	2.36e-01	71.7%	54.3%
3585742	102.1.2.18 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › OGG_N	0.52	41.0	2.80e-01	96.2%	20.9%
3808868	389.7.1.0 ↗	few secondary structure elements › EGF-like › EGF-like domain in S-receptor kinase SRK9 › EGF-like domain in S-receptor kinase SRK9	0.51	34.0	3.66e-01	100.0%	90.0%

D2 high residues 77-184

PDB

Domain cluster: rep: NIa-VPg__YP_010088104__Passiflora_edulis_symptomless_virus__2294149__D66-176