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WV_assembly_protein

Euk-Vir

Cotia_virus_SPAn232

WV_assembly_protein__YP_005296238__Cotia_virus_SPAn232__930275

Identity

Accession:: YP_005296238 ↗
Protein ID:: WV_assembly_protein
Kingdom:: euk

Quality

89.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Oryzopoxvirus› Cotia_virus_SPAn232

TaxID: 930275

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 538-723

PDB

Domain cluster: rep: MC042L__NP_043993__Molluscum_contagiosum_virus_subtype_1__10280__D591-783

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04497.19 best	Pox_E2-like	216.7	9.50e-64	95.2%	24.8%

D2 medium residues 176-260

PDB

Domain cluster: rep: putative_E2L_protein__YP_010085727__Orthopoxvirus_Abatino__2478919__D192-263

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04497.19 best	Pox_E2-like	98.3	6.10e-28	100.0%	11.8%
PF01399.34	PCI	23.8	5.70e-05	84.7%	70.2%

D3 medium residues 392-472

PDB

Domain cluster: rep: hypothetical_protein_SB87_gp017__YP_009112758__Parapoxvirus_red_deer_HL953__1579460__D390-463

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04497.19 best	Pox_E2-like	87.5	1.20e-24	100.0%	11.3%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1rz4A01	1.25.40.250	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1	0.64	44.0	3.87e-01	71.6%	64.2%
4c9bB00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.57	45.0	3.26e-01	92.6%	72.2%
2e5zA01	1.10.10.790	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module	0.56	38.0	4.27e-01	76.5%	98.3%
7uvpA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.56	41.0	2.91e-01	79.0%	67.5%
1r5aA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.53	42.0	3.59e-01	87.7%	58.8%
2lvsA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.53	34.0	3.81e-01	70.4%	94.6%
3tahA02	1.10.287.1770	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	37.0	3.62e-01	74.1%	75.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4566636	109.1.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C	0.59	41.0	3.65e-01	72.8%	59.2%
3992050	509.1.1.0 ↗	alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain	0.56	37.0	3.30e-01	71.6%	45.8%
4336939	109.4.1.472 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RAI16-like	0.51	43.0	3.00e-01	100.0%	72.5%
3888299	2007.2.3.12 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Tc-R-P	0.50	41.0	3.28e-01	93.8%	42.8%

D4 medium residues 473-537

PDB

Domain cluster: representative

CATH (31)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1rkqA02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.61	39.0	3.33e-01	72.3%	39.3%
3s95A01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.61	46.0	4.21e-01	81.5%	97.7%
4onyA01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.61	44.0	2.83e-01	76.9%	23.8%
2cveA02	3.30.70.240	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.61	40.0	4.01e-01	75.4%	66.7%
2x7gA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.60	44.0	4.11e-01	81.5%	90.9%
3mpoA02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.59	38.0	3.25e-01	72.3%	39.3%
3zduA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.58	43.0	4.12e-01	80.0%	68.4%
4q5eA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.57	40.0	3.85e-01	73.8%	73.3%
1js3A03	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.57	41.0	3.62e-01	76.9%	57.7%
3l4jA04	3.30.1360.40	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 ›	0.56	40.0	3.55e-01	76.9%	59.8%
5gt8D02	3.30.2130.10	Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like	0.56	41.0	3.41e-01	81.5%	42.6%
3uqcB01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.56	41.0	3.65e-01	78.5%	65.6%
2qyxB01	3.30.70.1360	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like	0.56	40.0	3.49e-01	78.5%	48.6%
2d5wA02	3.90.76.10	Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1	0.55	41.0	3.50e-01	83.1%	67.5%
2clqA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.55	41.0	3.79e-01	80.0%	100.0%
5swsE01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	39.0	3.29e-01	75.4%	60.4%
5mmjh01	3.30.1370.30	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.54	39.0	3.77e-01	76.9%	74.7%
2yvsA02	3.30.70.2560	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.54	36.0	3.82e-01	76.9%	78.0%
1yxsA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.54	39.0	3.61e-01	81.5%	96.7%
1i94H01	3.30.1370.30	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.53	38.0	3.65e-01	76.9%	76.9%
8j50A01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.53	39.0	2.57e-01	80.0%	87.4%
1nf2A02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.53	34.0	2.97e-01	72.3%	39.6%
4wnoA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.53	38.0	3.61e-01	83.1%	96.6%
3cz8A02	3.10.50.10	Alpha Beta › Roll › Chitinase A; domain 3 ›	0.52	36.0	3.79e-01	72.3%	94.7%
4qmfB01	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.52	37.0	3.51e-01	78.5%	96.3%
3jcmH04	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.52	38.0	3.65e-01	81.5%	71.4%
4uzgA01	2.60.40.740	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	35.0	2.77e-01	70.8%	60.9%
5xd6B01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.51	39.0	3.58e-01	87.7%	94.7%
6h4lA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	36.0	3.19e-01	75.4%	52.1%
1wu7A02	3.30.240.30	Alpha Beta › 2-Layer Sandwich › CRO Repressor ›	0.50	35.0	3.74e-01	73.8%	100.0%
2b30A02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.50	32.0	2.80e-01	72.3%	37.6%

ECOD (23)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3784938	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.62	44.0	4.14e-01	75.4%	61.3%
3502649	3012.1.1.4 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3	0.61	39.0	3.30e-01	72.3%	38.2%
2075999	3012.1.1.4 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3	0.59	38.0	3.25e-01	72.3%	39.3%
4342946	4354.1.1.1 ↗	a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF	0.58	42.0	3.17e-01	76.9%	31.2%
None	—		0.56	40.0	2.77e-01	78.5%	42.5%
4927492	304.51.1.11 ↗	a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_N	0.55	39.0	3.48e-01	73.8%	72.6%
5025961	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.55	40.0	4.00e-01	81.5%	77.1%
3295884	101.1.2.132 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF3591	0.55	39.0	3.61e-01	75.4%	65.9%
3231421	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.55	39.0	3.71e-01	76.9%	70.0%
5051462	306.3.1.0 ↗	a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like	0.55	40.0	3.72e-01	76.9%	73.8%
3794949	11.1.1.587 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR1-3_N_Ig-like	0.55	39.0	3.29e-01	75.4%	49.1%
4969158	4956.1.1.0 ↗	a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	0.54	40.0	3.88e-01	78.5%	77.3%
5062792	3012.1.1.0 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain	0.54	37.0	3.61e-01	72.3%	68.0%
3511291	11.1.1.97 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set	0.54	38.0	3.30e-01	75.4%	60.0%
3875508	11.1.1.99 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set	0.54	37.0	3.10e-01	75.4%	58.5%
4937799	4956.1.1.0 ↗	a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	0.53	39.0	3.80e-01	75.4%	75.7%
2530280	284.2.1.0 ↗	a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain	0.53	37.0	3.85e-01	73.8%	93.4%
3623014	11.1.1.859 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set, Ig_3	0.53	38.0	3.11e-01	75.4%	68.3%
3706937	304.24.1.3 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III	0.53	38.0	4.05e-01	78.5%	98.1%
3615457	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	36.0	3.67e-01	73.8%	84.6%
4951603	3012.1.1.18 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › MCR_C	0.51	35.0	3.22e-01	73.8%	61.3%
3611231	304.18.1.0 ↗	a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS	0.50	37.0	3.22e-01	80.0%	65.7%
4167932	101.1.2.177 ↗	alpha arrays › HTH › HTH › winged helix domain › MARF1_LOTUS	0.50	35.0	3.21e-01	72.3%	72.9%