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X03643.1__CAA27289.1__X__00001

Bact-Vir

X03643.1__CAA27289.1__X__00001

Identity

Accession:
X03643 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-59
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11133.13 best Phage_head_fibr 83.1 3.40e-23 100.0% 19.5%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 44.0 4.23e-01 100.0% 50.0%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.75 64.0 5.89e-01 98.2% 100.0%
1uz5A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.71 62.0 5.70e-01 100.0% 93.1%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.71 61.0 5.14e-01 98.2% 58.9%
1ileA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.63 50.0 3.44e-01 87.3% 81.5%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 44.0 4.34e-01 100.0% 78.7%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 38.0 3.16e-01 100.0% 40.0%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 42.0 4.48e-01 94.5% 100.0%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 35.0 2.82e-01 100.0% 31.2%
1nnxA00 2.40.50.200 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold 0.55 43.0 3.70e-01 100.0% 52.7%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 46.0 4.01e-01 100.0% 62.9%
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.54 46.0 3.48e-01 100.0% 71.2%
5c82A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 36.0 2.63e-01 76.4% 81.2%
5d6hA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 2.89e-01 78.2% 58.7%
5is8A02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.50 44.0 3.04e-01 100.0% 33.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2526359 70.4.1.2 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.93 87.0 8.42e-01 100.0% 91.7%
5007190 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.80 65.0 6.79e-01 94.5% 98.0%
4930449 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.79 68.0 6.14e-01 96.4% 94.7%
4991571 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.79 69.0 6.14e-01 100.0% 92.5%
5024766 7550.1.1.5 a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › DUF7839 0.79 66.0 4.63e-01 92.7% 31.2%
4956897 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.78 69.0 6.09e-01 100.0% 92.5%
4938684 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.78 69.0 5.98e-01 100.0% 87.1%
3227803 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.77 67.0 6.36e-01 98.2% 100.0%
5039270 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.77 66.0 6.62e-01 98.2% 94.5%
4975116 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.77 67.0 5.97e-01 100.0% 92.5%
4930420 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.76 67.0 6.21e-01 100.0% 77.1%
5022524 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.76 67.0 6.19e-01 100.0% 77.1%
4963571 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.75 65.0 6.15e-01 100.0% 83.1%
3603211 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.75 64.0 5.76e-01 100.0% 90.0%
2984229 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.74 63.0 5.73e-01 100.0% 92.3%
5083816 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.73 65.0 6.06e-01 100.0% 92.9%
5016125 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.72 64.0 6.42e-01 100.0% 100.0%
5002645 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.71 62.0 6.10e-01 98.2% 94.9%
2808420 70.4.1.1 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.71 61.0 4.90e-01 98.2% 51.4%
3290354 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.70 60.0 5.25e-01 100.0% 98.8%
3945811 70.4.1.7 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.65 55.0 5.43e-01 98.2% 95.0%
3513462 70.4.1.8 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.62 54.0 5.29e-01 100.0% 98.3%
5016702 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 48.0 4.08e-01 100.0% 58.1%
153873 1.1.7.36 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_U32_C 0.54 46.0 4.01e-01 100.0% 62.9%
3387405 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.53 43.0 3.06e-01 94.5% 68.4%
1116063 3070.1.1.4 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN 0.52 42.0 3.62e-01 92.7% 93.5%
2538957 389.1.1.5 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Plasmod_Pvs28 0.51 32.0 3.60e-01 89.1% 85.4%
4299752 7527.1.1.1 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.50 39.0 2.63e-01 96.4% 21.3%
D2 high residues 64-114
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11133.13 best Phage_head_fibr 70.9 1.70e-19 100.0% 18.4%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.91 84.0 6.72e-01 100.0% 63.4%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.82 72.0 5.90e-01 100.0% 58.9%
1uz5A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.79 71.0 6.31e-01 100.0% 91.7%
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.78 72.0 5.28e-01 100.0% 54.5%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.78 69.0 6.14e-01 100.0% 100.0%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.78 67.0 5.97e-01 98.0% 98.6%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.77 68.0 5.93e-01 100.0% 89.6%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 47.0 4.21e-01 100.0% 55.4%
1wvoA00 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.59 50.0 4.39e-01 96.1% 75.9%
3q8dA02 1.20.1440.120 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain 0.57 49.0 3.56e-01 100.0% 47.4%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.54 43.0 3.52e-01 90.2% 91.1%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.15e-01 80.4% 86.4%
3va7A07 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 46.0 4.09e-01 98.0% 92.1%
2q2tA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.14e-01 80.4% 96.2%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.53 40.0 3.21e-01 88.2% 73.1%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2640772 70.4.1.1 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.91 85.0 6.58e-01 100.0% 59.0%
5083816 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.88 81.0 7.21e-01 100.0% 91.4%
5002644 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.88 80.0 6.97e-01 100.0% 94.7%
5002645 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.87 79.0 7.49e-01 100.0% 96.6%
4988093 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.87 79.0 6.15e-01 100.0% 66.3%
3602933 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.86 78.0 7.17e-01 100.0% 92.3%
5007190 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.84 76.0 7.76e-01 96.1% 98.0%
4963571 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.83 77.0 7.02e-01 100.0% 81.5%
5083817 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.83 73.0 6.70e-01 98.0% 98.5%
5039270 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.82 75.0 7.27e-01 98.0% 94.5%
5030835 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.82 74.0 6.16e-01 100.0% 87.1%
5075574 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.81 73.0 6.23e-01 100.0% 91.3%
5024766 7550.1.1.5 a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › DUF7839 0.81 71.0 4.86e-01 94.1% 31.2%
4930420 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.81 74.0 6.61e-01 100.0% 77.1%
5022524 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.81 74.0 6.61e-01 100.0% 75.7%
4933166 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.81 72.0 6.18e-01 100.0% 93.8%
3513462 70.4.1.8 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.80 72.0 6.81e-01 100.0% 95.0%
3981037 70.4.1.9 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.80 72.0 7.07e-01 100.0% 98.2%
5016125 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.80 73.0 7.15e-01 100.0% 96.4%
3970970 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.79 70.0 6.15e-01 100.0% 92.0%
3398750 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.79 69.0 5.99e-01 100.0% 93.8%
1176867 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.78 69.0 5.68e-01 100.0% 81.3%
4992744 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.78 69.0 5.84e-01 100.0% 98.8%
4937267 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.78 71.0 5.28e-01 100.0% 48.3%
4935036 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.77 69.0 6.11e-01 100.0% 93.2%
2526359 70.4.1.2 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.77 69.0 6.59e-01 100.0% 91.7%
4602455 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.77 67.0 6.02e-01 100.0% 95.9%
5083172 70.4.1.9 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.75 62.0 6.14e-01 92.2% 100.0%
3394913 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.59 41.0 3.69e-01 78.4% 52.1%
3165975 1.1.7.97 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25917 0.58 51.0 4.43e-01 100.0% 85.0%
3401480 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.57 39.0 3.60e-01 78.4% 54.3%
3781831 223.2.1.28 a+b three layers › Profilin-like › profilin-like › profilin-like › Afi1 0.56 46.0 3.26e-01 100.0% 58.9%
3281221 3435.1.1.5 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF6119 0.55 39.0 2.76e-01 78.4% 96.5%
3735267 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 44.0 3.85e-01 98.0% 64.7%
4469732 247.1.1.30 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 0.54 44.0 2.79e-01 98.0% 51.1%
3966724 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 44.0 3.69e-01 100.0% 67.4%
3392605 2492.1.1.49 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PF26560 0.51 40.0 3.19e-01 96.1% 83.8%
4947842 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.50 39.0 2.88e-01 96.1% 76.6%