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X05927.1__CAA29369.1__X__00002

Bact-Vir

X05927.1__CAA29369.1__X__00002

Identity

Accession:
X05927 ↗
Kingdom:
phage

Quality

69.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Muvirus› Escherichia_phage_D108

TaxID: 665033

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-101
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.66 50.0 4.77e-01 81.6% 82.4%
3fw3B00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.66 55.0 3.88e-01 93.4% 64.7%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 50.0 3.06e-01 84.2% 27.7%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.63 49.0 4.85e-01 84.2% 84.1%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 56.0 4.46e-01 100.0% 53.2%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 3.96e-01 82.9% 51.3%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.61 46.0 3.15e-01 85.5% 22.4%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.61 43.0 4.24e-01 73.7% 85.4%
1wxcB01 3.30.1880.10 Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like 0.58 40.0 4.26e-01 100.0% 88.7%
1r8nA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 45.0 3.42e-01 85.5% 70.8%
3ptaA04 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 44.0 3.33e-01 82.9% 47.3%
5amhA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.55 48.0 4.29e-01 97.4% 72.6%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.79e-01 85.5% 28.0%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 48.0 4.06e-01 100.0% 68.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3707207 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.73 56.0 4.40e-01 81.6% 40.6%
3472947 9.1.1.53 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7044 0.70 64.0 5.62e-01 100.0% 69.1%
3607718 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.68 52.0 3.93e-01 81.6% 35.4%
3658595 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.67 44.0 4.61e-01 86.8% 72.9%
3174353 5.1.4.573 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30151 0.62 49.0 3.09e-01 86.8% 24.8%
3786271 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 42.0 3.37e-01 73.7% 81.2%
2116605 206.1.1.7 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.60 46.0 3.10e-01 84.2% 35.5%
3583263 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 50.0 4.36e-01 97.4% 96.7%
3301271 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 2.90e-01 85.5% 28.5%
3263989 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 4.59e-01 94.7% 95.8%
4445317 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.57 44.0 3.55e-01 85.5% 45.2%
3591097 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 42.0 3.00e-01 85.5% 29.1%
4011082 5.1.4.514 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ 0.55 44.0 2.71e-01 89.5% 19.8%
3777334 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.55 43.0 3.47e-01 88.2% 45.3%
5049620 304.106.1.0 ↗ a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 0.54 42.0 2.63e-01 82.9% 87.2%
3679362 4.1.1.351 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 0.54 39.0 3.79e-01 77.6% 90.6%
3622446 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 43.0 4.42e-01 92.1% 95.7%
3488345 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.53 47.0 3.32e-01 100.0% 83.9%
3439615 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.52 38.0 3.09e-01 81.6% 82.4%
4325808 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.51 35.0 3.27e-01 71.1% 97.9%
3798336 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.51 42.0 4.32e-01 93.4% 98.6%
3763936 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.51 44.0 3.51e-01 100.0% 60.6%
3552202 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.50 45.0 3.05e-01 100.0% 44.1%