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X98106.1__CAA66750.1__X__00014
Bact-VirX98106.1__CAA66750.1__X__00014
Identity
- Accession:
- X98106 ↗
- Kingdom:
- phage
Quality
85.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-40
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.91 | 82.0 | 6.46e-01 | 100.0% | 75.9% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.84 | 71.0 | 5.16e-01 | 97.5% | 74.3% |
| 2jaqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.83 | 72.0 | 4.60e-01 | 100.0% | 26.5% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.78 | 66.0 | 4.83e-01 | 100.0% | 63.7% |
| 3i71B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 53.0 | 4.70e-01 | 72.5% | 50.0% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.76 | 62.0 | 4.67e-01 | 100.0% | 75.2% |
| 3tviA01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.76 | 53.0 | 3.20e-01 | 75.0% | 11.1% |
| 7xcnM01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.74 | 59.0 | 4.79e-01 | 90.0% | 70.5% |
| 6dv2G02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.73 | 51.0 | 3.29e-01 | 97.5% | 16.3% |
| 3ne5B04 | 6.10.140.730 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 58.0 | 5.51e-01 | 97.5% | 78.4% |
| 3zxsC02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.71 | 59.0 | 4.04e-01 | 100.0% | 40.3% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.69 | 56.0 | 4.77e-01 | 100.0% | 82.4% |
| 1o82A00 | 1.20.225.10 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 | 0.69 | 59.0 | 4.96e-01 | 100.0% | 58.6% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.67 | 56.0 | 4.93e-01 | 97.5% | 71.0% |
| 2rcnA03 | 1.10.40.50 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 | 0.67 | 45.0 | 3.99e-01 | 72.5% | 93.5% |
| 7powA01 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.66 | 54.0 | 3.54e-01 | 100.0% | 27.3% |
| 4f5cA04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.66 | 54.0 | 3.28e-01 | 100.0% | 14.8% |
| 4c0eA01 | 1.25.40.790 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 55.0 | 3.36e-01 | 100.0% | 20.8% |
| 1wekF01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 50.0 | 3.22e-01 | 85.0% | 28.1% |
| 4jxtA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 55.0 | 3.97e-01 | 100.0% | 50.8% |
| 4kxfB02 | 1.10.1900.50 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › | 0.65 | 47.0 | 4.26e-01 | 77.5% | 59.6% |
| 3k8kA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 50.0 | 2.96e-01 | 95.0% | 20.3% |
| 3dfgA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 48.0 | 4.67e-01 | 100.0% | 89.6% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 48.0 | 4.05e-01 | 97.5% | 48.7% |
| 2feaA02 | 3.90.1470.20 | Alpha Beta › Alpha-Beta Complex › thrh gene product, domain 2 › | 0.61 | 48.0 | 3.71e-01 | 92.5% | 48.0% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 46.0 | 4.36e-01 | 100.0% | 76.8% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.59 | 46.0 | 3.70e-01 | 100.0% | 40.2% |
| 2dsjA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.59 | 45.0 | 4.08e-01 | 100.0% | 61.2% |
| 1uouA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.58 | 44.0 | 4.00e-01 | 100.0% | 60.3% |
| 2nq2A00 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.58 | 47.0 | 2.90e-01 | 97.5% | 50.0% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.56 | 42.0 | 3.89e-01 | 100.0% | 61.2% |
| 2x98A02 | 1.10.60.40 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › | 0.52 | 41.0 | 3.47e-01 | 92.5% | 68.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3475614 | 186.2.1.1 ↗ | alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box | 0.84 | 74.0 | 5.11e-01 | 100.0% | 36.2% |
| 5043888 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.83 | 73.0 | 6.21e-01 | 100.0% | 67.7% |
| 3352389 | 101.1.10.58 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF30926 | 0.82 | 70.0 | 6.33e-01 | 97.5% | 80.0% |
| 3841169 | 186.2.1.1 ↗ | alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box | 0.79 | 69.0 | 4.61e-01 | 100.0% | 30.3% |
| 3376834 | 109.4.1.27 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2 | 0.77 | 67.0 | 4.31e-01 | 100.0% | 39.1% |
| 4945453 | 2003.1.1.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N | 0.77 | 65.0 | 4.11e-01 | 92.5% | 27.6% |
| 3440587 | 109.4.1.1262 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long | 0.76 | 65.0 | 4.30e-01 | 100.0% | 25.9% |
| 3656587 | 2007.1.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase | 0.75 | 65.0 | 3.94e-01 | 100.0% | 39.3% |
| 3416035 | 104.1.1.0 ↗ | alpha duplicates or obligate multimers › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain | 0.74 | 63.0 | 5.74e-01 | 100.0% | 78.2% |
| 1103158 | 6119.1.1.2 ↗ | alpha bundles › Helical bundle domain in CusB › Helical bundle domain in CusB › Helical bundle domain in CusB › PF25869 | 0.74 | 60.0 | 5.61e-01 | 97.5% | 75.5% |
| 5033360 | 101.1.1.131 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Arch_fla_DE | 0.73 | 61.0 | 4.81e-01 | 95.0% | 47.1% |
| 5009729 | 1030.1.1.0 ↗ | alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 | 0.73 | 62.0 | 4.53e-01 | 100.0% | 37.4% |
| 4517001 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.72 | 50.0 | 4.72e-01 | 75.0% | 64.0% |
| 5064030 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.70 | 58.0 | 4.59e-01 | 100.0% | 47.4% |
| 5009203 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 48.0 | 4.27e-01 | 75.0% | 48.3% |
| 4497527 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.68 | 59.0 | 3.64e-01 | 100.0% | 18.1% |
| 4397003 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.67 | 57.0 | 5.40e-01 | 97.5% | 86.0% |
| 3928581 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.64 | 49.0 | 2.83e-01 | 100.0% | 8.2% |
| 3507587 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.64 | 52.0 | 3.35e-01 | 95.0% | 23.9% |
| 3464621 | 2484.1.1.131 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_21 | 0.63 | 52.0 | 3.13e-01 | 100.0% | 13.2% |
| 5048289 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.62 | 48.0 | 3.30e-01 | 100.0% | 77.4% |
| 1068638 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.59 | 46.0 | 4.36e-01 | 100.0% | 76.8% |
| 4128053 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.59 | 45.0 | 4.24e-01 | 97.5% | 78.2% |
| 3217577 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.55 | 44.0 | 4.03e-01 | 100.0% | 68.3% |
| 4243573 | 184.1.1.1 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N | 0.52 | 39.0 | 3.61e-01 | 100.0% | 61.5% |