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XE
Euk-VirMythimna_unipuncta_nucleopolyhedrovirus
XE__YP_009666727__Mythimna_unipuncta_nucleopolyhedrovirus__447897
Identity
- Accession:
- YP_009666727 ↗
- Protein ID:
- XE
- Kingdom:
- euk
Quality
75.3
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Mythimna_unipuncta_nucleopolyhedrovirus
TaxID: 447897
Cluster
View cluster (14 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 16-81
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p3cA02 | 3.30.1700.10 | Alpha Beta › 2-Layer Sandwich › lpxc deacetylase, domain 1 › lpxc deacetylase, domain 2 | 0.69 | 37.0 | 2.81e-01 | 100.0% | 21.9% |
| 1bapA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 55.0 | 4.23e-01 | 100.0% | 89.8% |
| 1gcaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 55.0 | 4.25e-01 | 100.0% | 93.8% |
| 5by7A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.60 | 51.0 | 4.06e-01 | 100.0% | 66.4% |
| 4ciuA04 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 43.0 | 3.84e-01 | 100.0% | 58.1% |
| 4ohcC00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 44.0 | 3.20e-01 | 95.5% | 77.5% |
| 1vb3A03 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 40.0 | 3.25e-01 | 84.8% | 76.7% |
| 5ji5A00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.53 | 41.0 | 2.65e-01 | 83.3% | 63.3% |
| 1ylhA01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.53 | 43.0 | 3.13e-01 | 92.4% | 71.9% |
| 3hbaA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.53 | 45.0 | 3.30e-01 | 98.5% | 58.6% |
| 4ernA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 3.12e-01 | 100.0% | 76.9% |
| 4am8E01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.52 | 44.0 | 3.37e-01 | 98.5% | 49.7% |
| 3ds8A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 42.0 | 3.01e-01 | 100.0% | 84.6% |
| 4f2gA01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.52 | 44.0 | 3.46e-01 | 98.5% | 59.9% |
| 3ngxA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 42.0 | 3.52e-01 | 97.0% | 97.6% |
| 4f2gA02 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.50 | 39.0 | 3.10e-01 | 86.4% | 65.5% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4027214 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.82 | 75.0 | 6.84e-01 | 100.0% | 76.5% |
| 3574082 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.75 | 64.0 | 5.77e-01 | 93.9% | 71.1% |
| 4634374 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.64 | 45.0 | 3.78e-01 | 75.8% | 61.7% |
| 4029535 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.62 | 42.0 | 3.05e-01 | 71.2% | 66.1% |
| 3622579 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.58 | 43.0 | 2.89e-01 | 78.8% | 89.3% |
| 4020230 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 49.0 | 4.14e-01 | 100.0% | 91.3% |
| 4029190 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.56 | 36.0 | 2.38e-01 | 98.5% | 14.9% |
| 4007755 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 47.0 | 2.79e-01 | 100.0% | 34.8% |
| 4943182 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 47.0 | 3.71e-01 | 95.5% | 87.9% |
| 4404187 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.54 | 46.0 | 3.59e-01 | 98.5% | 57.4% |
| 3276935 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.54 | 41.0 | 2.76e-01 | 80.3% | 92.4% |
| 3487184 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.54 | 47.0 | 3.57e-01 | 100.0% | 96.4% |
| 1447873 | 2004.1.1.500 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5, AAA_6 | 0.54 | 47.0 | 3.43e-01 | 98.5% | 36.8% |
| 5072657 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.54 | 47.0 | 3.23e-01 | 100.0% | 82.9% |
| 4234660 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.54 | 45.0 | 3.39e-01 | 98.5% | 54.6% |
| 4389891 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.53 | 45.0 | 3.47e-01 | 98.5% | 55.2% |
| 4931800 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.53 | 44.0 | 3.54e-01 | 98.5% | 59.3% |
| 5064251 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.53 | 45.0 | 3.42e-01 | 98.5% | 59.4% |
| 4944263 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.52 | 44.0 | 3.50e-01 | 98.5% | 61.3% |
| 4284161 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.52 | 44.0 | 3.55e-01 | 98.5% | 61.4% |
| 5078485 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.52 | 44.0 | 3.33e-01 | 98.5% | 64.6% |
| 4075924 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 42.0 | 3.61e-01 | 93.9% | 98.3% |
| 5037129 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.52 | 44.0 | 4.09e-01 | 95.5% | 89.4% |
| 3830407 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 42.0 | 3.31e-01 | 100.0% | 74.1% |
| 4616212 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.51 | 42.0 | 2.96e-01 | 95.5% | 86.3% |
| 3601401 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 43.0 | 3.18e-01 | 100.0% | 84.1% |
| 3768565 | 2007.1.6.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain | 0.51 | 42.0 | 3.38e-01 | 92.4% | 82.7% |
| 3660457 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.51 | 41.0 | 3.21e-01 | 89.4% | 52.4% |
| 5076169 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.51 | 42.0 | 3.33e-01 | 98.5% | 63.9% |
| 3420098 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.51 | 36.0 | 2.58e-01 | 75.8% | 77.7% |
| 3643307 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.51 | 41.0 | 3.39e-01 | 90.9% | 63.2% |
| 3390077 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.50 | 42.0 | 3.31e-01 | 100.0% | 93.1% |
D2
medium
residues 82-133
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tdjA01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 46.0 | 3.06e-01 | 76.9% | 17.0% |
| 3id7A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.66 | 55.0 | 3.27e-01 | 94.2% | 19.2% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 46.0 | 4.55e-01 | 75.0% | 85.5% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.64 | 46.0 | 3.91e-01 | 80.8% | 46.5% |
| 1mjtB01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.64 | 47.0 | 3.48e-01 | 78.8% | 35.7% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.63 | 51.0 | 4.52e-01 | 94.2% | 61.7% |
| 1j78A05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.59 | 42.0 | 4.10e-01 | 78.8% | 70.0% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 44.0 | 3.93e-01 | 88.5% | 89.0% |
| 1fc6A01 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.57 | 42.0 | 3.52e-01 | 82.7% | 94.9% |
| 4griA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.57 | 40.0 | 4.03e-01 | 76.9% | 75.5% |
| 5jbrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 47.0 | 4.00e-01 | 96.2% | 57.0% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.75e-01 | 82.7% | 69.0% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 42.0 | 3.21e-01 | 88.5% | 49.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3739141 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.90 | 79.0 | 5.67e-01 | 94.2% | 36.3% |
| 3933575 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.72 | 60.0 | 5.43e-01 | 100.0% | 77.3% |
| 3994728 | 7094.1.1.3 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › OPA1_C | 0.67 | 54.0 | 4.11e-01 | 96.2% | 36.4% |
| 3593759 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.56 | 40.0 | 3.67e-01 | 75.0% | 65.7% |
| 3369538 | 3694.1.1.0 ↗ | alpha bundles › Tail specific protease helical domain › Tail specific protease helical domain › Tail specific protease helical domain | 0.56 | 40.0 | 3.57e-01 | 78.8% | 87.5% |
| 3699836 | 568.1.1.4 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › CHCH | 0.54 | 39.0 | 3.74e-01 | 75.0% | 76.7% |