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Zinc-finger_domain
Euk-VirPandoravirus_salinus
Zinc-finger_domain__YP_008437170__Pandoravirus_salinus__1349410
Identity
- Accession:
- YP_008437170 ↗
- Protein ID:
- Zinc-finger_domain
- Kingdom:
- euk
Quality
50.3
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 341-362_381-412
D2
medium
residues 413-467_652-668
D3
medium
residues 468-572_588-651
Domain cluster:
rep: IMGVR_UViG_3300032086_002007-3300032086-Ga0326499_10014892__D37-160
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rznA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.68 | 45.0 | 4.80e-01 | 100.0% | 75.3% |
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.67 | 37.0 | 4.31e-01 | 99.4% | 74.2% |
| 2egvA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.57 | 25.0 | 3.76e-01 | 82.8% | 100.0% |
| 4oc8A02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 34.0 | 3.41e-01 | 100.0% | 57.0% |
| 1x9zA01 | 3.30.1540.20 | Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain | 0.55 | 28.0 | 3.78e-01 | 70.4% | 90.3% |
| 3s1sA01 | 3.90.1570.30 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.54 | 34.0 | 3.42e-01 | 100.0% | 62.1% |
| 1sqwA01 | 3.10.450.220 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 22.0 | 2.86e-01 | 100.0% | 65.6% |
| 4f0qA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 32.0 | 3.09e-01 | 100.0% | 51.6% |
| 3ddjA01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.50 | 34.0 | 3.77e-01 | 88.8% | 85.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4357158 | 2008.1.1.13 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecU | 0.69 | 45.0 | 4.47e-01 | 100.0% | 62.3% |
| 5051523 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 31.0 | 3.67e-01 | 100.0% | 70.8% |
| 3839405 | 2008.1.1.161 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7149 | 0.55 | 43.0 | 4.04e-01 | 100.0% | 68.5% |
| 4331456 | 2008.1.1.187 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_AccI | 0.54 | 50.0 | 4.67e-01 | 100.0% | 80.5% |
| 5081646 | 7528.1.1.0 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains | 0.54 | 28.0 | 3.52e-01 | 90.5% | 81.0% |
| 3387954 | 2008.1.1.161 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7149 | 0.52 | 42.0 | 3.79e-01 | 100.0% | 61.3% |
| 5081086 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.52 | 34.0 | 3.70e-01 | 100.0% | 76.6% |
| 4666731 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.52 | 23.0 | 3.48e-01 | 100.0% | 100.0% |
| 4936198 | 2008.1.1.78 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_endonuc | 0.50 | 29.0 | 3.30e-01 | 98.8% | 74.8% |