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Zinc-finger_domain_containing_protein
Euk-VirPandoravirus_dulcis
Zinc-finger_domain_containing_protein__YP_008319170__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_008319170 ↗
- Protein ID:
- Zinc-finger_domain_containing_protein
- Kingdom:
- euk
Quality
50.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 406-507_539-555_642-669
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wdtC02 | 3.30.1490.420 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 | 0.57 | 29.0 | 3.43e-01 | 93.9% | 68.3% |
| 2w00A01 | 3.90.1570.50 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.53 | 38.0 | 3.64e-01 | 74.1% | 76.6% |
| 1yx3A01 | 3.30.1420.10 | Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain | 0.51 | 15.0 | 2.81e-01 | 87.1% | 92.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938798 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.63 | 45.0 | 4.56e-01 | 72.8% | 91.7% |
| 4494448 | 2008.1.1.183 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27227 | 0.61 | 43.0 | 4.49e-01 | 72.1% | 93.3% |
| 3589020 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 41.0 | 4.13e-01 | 70.1% | 77.3% |
| 4991161 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.57 | 29.0 | 3.35e-01 | 78.9% | 65.7% |
| 4658740 | 220.1.1.82 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 | 0.57 | 28.0 | 3.70e-01 | 90.5% | 88.0% |
| 3269122 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.55 | 21.0 | 3.18e-01 | 85.7% | 87.3% |
| 4545531 | 220.1.1.255 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_10 | 0.53 | 25.0 | 3.27e-01 | 88.4% | 78.8% |
| 5006562 | 2008.1.1.178 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NA-iREase1 | 0.52 | 39.0 | 3.83e-01 | 76.9% | 91.6% |
| 4152187 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 36.0 | 4.01e-01 | 72.1% | 93.0% |
D2
medium
residues 508-538_556-569_593-641
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.57 | 32.0 | 3.62e-01 | 75.5% | 71.8% |
| 3tviA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.55 | 34.0 | 2.84e-01 | 78.7% | 35.8% |
| 1zoqA00 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.54 | 43.0 | 3.39e-01 | 85.1% | 96.3% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 34.0 | 3.79e-01 | 76.6% | 81.1% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 41.0 | 2.76e-01 | 86.2% | 88.8% |
| 3ffrA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 43.0 | 3.26e-01 | 92.6% | 68.0% |
| 1vqyB01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 3.65e-01 | 79.8% | 71.6% |
| 5fiiB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 31.0 | 3.36e-01 | 78.7% | 71.8% |
| 3m5uA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 40.0 | 3.04e-01 | 86.2% | 66.5% |
| 5bviA00 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.51 | 39.0 | 3.14e-01 | 81.9% | 94.0% |
| 2jzxA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.50 | 34.0 | 3.68e-01 | 80.9% | 82.3% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4113419 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.64 | 55.0 | 4.21e-01 | 95.7% | 81.4% |
| 4982659 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.58 | 46.0 | 3.22e-01 | 88.3% | 55.4% |
| 4985892 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.58 | 36.0 | 3.75e-01 | 75.5% | 65.6% |
| 4940948 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.58 | 38.0 | 3.94e-01 | 76.6% | 70.0% |
| 4043605 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.55 | 33.0 | 3.45e-01 | 76.6% | 64.7% |
| 3772155 | 73.1.1.6 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 | 0.55 | 45.0 | 3.40e-01 | 89.4% | 84.4% |
| 3486254 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 35.0 | 3.83e-01 | 79.8% | 78.8% |
| 3214986 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.54 | 34.0 | 3.64e-01 | 77.7% | 73.8% |
| 4416349 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.54 | 33.0 | 3.56e-01 | 76.6% | 72.5% |
| 3547153 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.54 | 34.0 | 3.63e-01 | 76.6% | 73.8% |
| 4935067 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.53 | 36.0 | 3.80e-01 | 88.3% | 76.5% |
| 3658694 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.53 | 34.0 | 3.78e-01 | 76.6% | 81.3% |
| 4220147 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.52 | 35.0 | 3.73e-01 | 88.3% | 77.6% |
| 4373827 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.52 | 32.0 | 3.30e-01 | 79.8% | 64.8% |
| 3999204 | 73.1.1.3 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 | 0.51 | 43.0 | 3.37e-01 | 90.4% | 97.9% |
| 3213699 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.51 | 32.0 | 3.28e-01 | 76.6% | 64.2% |
| 3398955 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.50 | 39.0 | 2.63e-01 | 81.9% | 26.2% |