←Back to structures

Zn-finger_containing_protein

Euk-Vir

Only_Syngen_Nebraska_virus_5

Zn-finger_containing_protein__YP_009325596__Only_Syngen_Nebraska_virus_5__1917232

Identity

Accession:
YP_009325596 ↗
Protein ID:
Zn-finger_containing_protein
Kingdom:
euk

Quality

88.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Chlorovirus› Only_Syngen_Nebraska_virus_5

TaxID: 1917232

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 72-145
PDB
Domain cluster: rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00233__D118-220
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.89 84.0 6.54e-01 100.0% 64.1%
1e7lA01 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.70 50.0 4.90e-01 75.7% 81.2%
2uzgA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 47.0 4.40e-01 83.8% 60.0%
3mhsA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 45.0 3.81e-01 87.8% 58.3%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 31.0 3.18e-01 91.9% 54.7%
6rloK01 1.10.1450.10 Mainly Alpha › Orthogonal Bundle › Cd81 Antigen, Extracellular Domain; Chain: A › Tetraspanin 0.53 26.0 2.68e-01 85.1% 49.3%
3lrqB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 27.0 2.66e-01 85.1% 42.5%
3thiA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 42.0 3.28e-01 93.2% 86.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
119462 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.88 83.0 6.51e-01 100.0% 64.1%
3397473 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.83 75.0 6.36e-01 100.0% 66.7%
4979945 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.82 76.0 6.25e-01 100.0% 75.2%
3879791 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.79 72.0 5.03e-01 100.0% 35.6%
3561303 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.79 71.0 5.46e-01 100.0% 48.5%
3978374 378.1.1.18 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF968 0.74 54.0 5.13e-01 75.7% 67.1%
4492949 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.74 57.0 5.02e-01 89.2% 57.1%
3906945 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.72 53.0 4.76e-01 83.8% 57.0%
5080086 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.66 52.0 5.13e-01 94.6% 78.8%
4969429 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.64 58.0 4.49e-01 100.0% 70.6%
3551905 5086.1.1.143 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Med27 0.64 54.0 4.30e-01 95.9% 72.9%
2322754 376.1.2.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 0.63 42.0 4.26e-01 97.3% 68.9%
3955047 376.1.2.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF27609 0.60 41.0 4.44e-01 97.3% 88.3%
3736870 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 50.0 4.88e-01 94.6% 85.0%
5052942 911.1.1.1 ↗ few secondary structure elements › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › FeThRed_B 0.58 44.0 3.94e-01 83.8% 89.1%
4947617 911.1.1.0 ↗ few secondary structure elements › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain › Ferredoxin thioredoxin reductase (FTR), catalytic beta chain 0.56 42.0 3.89e-01 83.8% 80.0%
3804511 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.54 36.0 3.44e-01 86.5% 56.7%
5082352 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.54 47.0 3.83e-01 100.0% 76.6%
3752080 207.1.1.102 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.51 38.0 2.54e-01 79.7% 30.0%
3576745 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 38.0 3.18e-01 100.0% 43.9%
3905886 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.51 29.0 2.80e-01 86.5% 45.6%
D2 high residues 150-268
PDB
Domain cluster: rep: hypothetical_protein_PBCV1_A267L__NP_048621__Paramecium_bursaria_Chlorella_virus_1__10506__D18-124