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ac18-like_protein

Euk-Vir

Lambdina_fiscellaria_nucleopolyhedrovirus

ac18-like_protein__YP_009133223__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929

Identity

Accession:: YP_009133223 ↗
Protein ID:: ac18-like_protein
Kingdom:: euk

Quality

72.4 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Lambdina_fiscellaria_nucleopolyhedrovirus

TaxID: 1642929

Cluster

View cluster (40 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 428-529

PDB

Domain cluster: rep: hypothetical_protein__YP_002300606__Adoxophyes_orana_nucleopolyhedrovirus__542343__D251-376

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ciaA04	1.25.40.320	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal domain	0.61	42.0	3.85e-01	100.0%	52.9%
2nq2A00	1.10.3470.10	Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC	0.60	39.0	2.77e-01	95.1%	21.4%
2kvcA01	1.10.150.430	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF3349, helical bundle	0.60	38.0	4.07e-01	86.3%	73.9%
3jsbA01	1.20.1440.300	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain	0.57	34.0	3.81e-01	74.5%	75.3%
3dqpA00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.57	40.0	3.16e-01	72.5%	86.2%
3uorB02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.55	43.0	3.42e-01	84.3%	80.6%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3377286	2002.3.1.1 ↗	a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_38N	0.54	39.0	2.71e-01	75.5%	21.9%
3961583	141.1.1.3 ↗	alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA	0.53	39.0	3.22e-01	78.4%	52.8%
4194700	2002.3.1.1 ↗	a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_38N	0.53	38.0	2.62e-01	75.5%	20.8%
3508664	3930.1.1.0 ↗	alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase	0.52	37.0	3.60e-01	74.5%	65.2%
3743488	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.51	37.0	3.66e-01	76.5%	74.5%
3990878	109.4.1.442 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › THOC2_N	0.50	38.0	3.16e-01	100.0%	43.7%

D2 medium residues 1-43_149-216_273-344

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07134.18 best	AcMNPV_Orf18	76.5	3.00e-21	80.3%	35.2%
PF07134.18	AcMNPV_Orf18	28.2	1.50e-06	21.9%	10.8%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1d3bC00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.61	23.0	3.60e-01	78.7%	85.9%
3jb9H00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.58	23.0	3.47e-01	77.6%	86.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3506156	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.61	24.0	3.63e-01	75.4%	85.3%
3277627	243.1.1.0 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like	0.54	25.0	3.00e-01	89.6%	64.3%

D3 medium residues 61-148_345-368

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07134.18 best	AcMNPV_Orf18	46.4	4.20e-12	94.6%	29.6%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1k04A02	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.62	30.0	3.14e-01	73.2%	48.1%
4h63H01	1.20.58.1710	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	33.0	3.98e-01	76.8%	83.3%
4nsmA00	6.10.250.2770	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.58	31.0	3.79e-01	73.2%	78.9%
5eo6B00	3.40.1500.10	Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic	0.57	46.0	3.37e-01	86.6%	54.1%
3tbiB02	6.10.140.1670	Special › Helix non-globular › Helix Hairpins ›	0.56	35.0	3.68e-01	77.7%	68.0%
1zpyA00	6.10.140.1960	Special › Helix non-globular › Helix Hairpins ›	0.55	31.0	3.42e-01	78.6%	68.1%
2crbA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.54	29.0	3.14e-01	73.2%	57.7%
1s35A02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	30.0	3.11e-01	77.7%	53.6%
2kg7B00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.54	34.0	3.62e-01	78.6%	72.2%
3pe5A00	3.40.630.190	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein	0.51	37.0	2.76e-01	78.6%	30.0%
1ykhA00	6.10.140.200	Special › Helix non-globular › Helix Hairpins ›	0.51	33.0	3.55e-01	78.6%	76.8%
2kq9A00	1.20.120.910	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain	0.51	31.0	3.17e-01	74.1%	59.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5040911	316.1.1.0 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase	0.64	57.0	4.90e-01	97.3%	74.9%
4367664	3718.1.1.1 ↗	alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT	0.53	30.0	3.12e-01	86.6%	59.0%