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ac53
Euk-VirLambdina_fiscellaria_nucleopolyhedrovirus
ac53__YP_009133310__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929
Identity
- Accession:
- YP_009133310 ↗
- Protein ID:
- ac53
- Kingdom:
- euk
Quality
86.4
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Lambdina_fiscellaria_nucleopolyhedrovirus
TaxID: 1642929
Cluster
View cluster (41 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-26_88-136
Domain cluster:
rep: ac53__YP_009552175__Malacosoma_neustria_nucleopolyhedrovirus__38012__D1-25_104-134
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05883.18 best | Baculo_RING | 28.7 | 1.70e-06 | 76.0% | 37.4% |
D2
medium
residues 27-87
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05883.18 best | Baculo_RING | 57.2 | 2.60e-15 | 100.0% | 43.9% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2d8sA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 57.0 | 5.20e-01 | 93.4% | 68.8% |
| 2lgvA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.68 | 58.0 | 4.96e-01 | 96.7% | 68.0% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 38.0 | 3.53e-01 | 82.0% | 52.5% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 44.0 | 4.56e-01 | 86.9% | 96.6% |
| 6fwvA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 3.61e-01 | 83.6% | 53.3% |
| 4p0dA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 3.32e-01 | 82.0% | 41.7% |
| 7sz2A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.54 | 39.0 | 3.56e-01 | 82.0% | 88.0% |
| 3k7mX02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.54 | 45.0 | 3.18e-01 | 95.1% | 91.7% |
| 5z06A01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.54 | 40.0 | 3.00e-01 | 83.6% | 36.4% |
| 4uzgA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.26e-01 | 82.0% | 52.9% |
| 2f4nB02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.54 | 39.0 | 3.49e-01 | 80.3% | 70.2% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.53 | 40.0 | 3.84e-01 | 100.0% | 69.7% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.53 | 40.0 | 3.09e-01 | 82.0% | 36.2% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 40.0 | 3.80e-01 | 85.2% | 81.6% |
| 2o2zA00 | 3.40.50.10680 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains | 0.52 | 45.0 | 2.86e-01 | 98.4% | 40.6% |
| 1ut9A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.40e-01 | 83.6% | 56.1% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.51 | 38.0 | 3.24e-01 | 82.0% | 55.0% |
| 3kptB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 37.0 | 3.15e-01 | 82.0% | 47.2% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3610584 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.80 | 63.0 | 5.23e-01 | 100.0% | 49.5% |
| 3782724 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.80 | 65.0 | 6.60e-01 | 100.0% | 91.5% |
| 3688647 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.79 | 64.0 | 5.50e-01 | 100.0% | 57.0% |
| 4206364 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.78 | 63.0 | 5.28e-01 | 100.0% | 53.0% |
| 3532788 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.78 | 63.0 | 6.38e-01 | 100.0% | 88.3% |
| 3250122 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.77 | 70.0 | 5.89e-01 | 100.0% | 61.0% |
| 1835651 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.76 | 50.0 | 4.89e-01 | 100.0% | 62.7% |
| 3594491 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.75 | 67.0 | 6.25e-01 | 100.0% | 80.0% |
| 3591426 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.75 | 66.0 | 6.35e-01 | 100.0% | 84.3% |
| 3431661 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.74 | 61.0 | 6.14e-01 | 93.4% | 91.7% |
| 3683622 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.73 | 63.0 | 6.34e-01 | 93.4% | 100.0% |
| 3460168 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.73 | 59.0 | 5.26e-01 | 88.5% | 70.6% |
| 3402487 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.72 | 60.0 | 5.90e-01 | 93.4% | 86.2% |
| 3659589 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.71 | 63.0 | 6.18e-01 | 98.4% | 92.3% |
| 3226581 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.71 | 60.0 | 6.04e-01 | 93.4% | 93.3% |
| 3277696 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.71 | 62.0 | 5.83e-01 | 100.0% | 80.8% |
| 3623991 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.70 | 59.0 | 5.82e-01 | 91.8% | 95.4% |
| 3698858 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.70 | 59.0 | 5.96e-01 | 91.8% | 93.3% |
| 3178301 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 53.0 | 4.50e-01 | 100.0% | 50.0% |
| 5009328 | 150.1.1.207 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF2175 | 0.69 | 52.0 | 4.29e-01 | 80.3% | 98.1% |
| 3647138 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 55.0 | 5.73e-01 | 100.0% | 98.2% |
| 4011070 | 376.1.1.106 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF29452 | 0.66 | 59.0 | 5.39e-01 | 100.0% | 77.5% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.62 | 46.0 | 4.13e-01 | 80.3% | 56.8% |
| 5030770 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.60 | 44.0 | 3.89e-01 | 80.3% | 52.6% |
| 4983601 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.60 | 41.0 | 3.63e-01 | 82.0% | 48.9% |
| 3958893 | 1077.1.1.0 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain | 0.59 | 43.0 | 4.57e-01 | 98.4% | 96.0% |
| 5042578 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 37.0 | 3.51e-01 | 83.6% | 53.3% |
| 3932246 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 43.0 | 3.56e-01 | 83.6% | 61.7% |
| 5076111 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.56 | 40.0 | 3.54e-01 | 83.6% | 51.1% |
| 4006675 | 11.1.1.156 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG3 | 0.55 | 38.0 | 3.44e-01 | 83.6% | 50.0% |
| 3603549 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 41.0 | 3.84e-01 | 82.0% | 76.9% |
| 4009311 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.53 | 36.0 | 3.58e-01 | 83.6% | 67.7% |
| None | — | 0.52 | 39.0 | 3.37e-01 | 83.6% | 56.2% | |
| 3469360 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.52 | 40.0 | 3.68e-01 | 83.6% | 77.5% |
| 3965634 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.52 | 42.0 | 4.16e-01 | 100.0% | 86.2% |
| 3261135 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 39.0 | 3.19e-01 | 83.6% | 60.8% |
| 5023153 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.52 | 39.0 | 3.17e-01 | 83.6% | 58.4% |
| 3941676 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.52 | 44.0 | 4.30e-01 | 100.0% | 88.6% |
| 4006572 | 171.1.1.12 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › PF28438 | 0.52 | 44.0 | 4.39e-01 | 100.0% | 95.4% |
| 4662939 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.52 | 44.0 | 4.29e-01 | 100.0% | 90.0% |
| 4956009 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 3.45e-01 | 83.6% | 57.6% |
| 3163907 | 221.1.1.220 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF28438 | 0.51 | 44.0 | 4.26e-01 | 100.0% | 88.6% |
| 5014000 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.51 | 38.0 | 3.03e-01 | 82.0% | 54.8% |
| 4295284 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.51 | 43.0 | 4.12e-01 | 100.0% | 82.7% |
| 3954764 | 316.1.1.68 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF28438 | 0.51 | 43.0 | 4.11e-01 | 100.0% | 82.7% |
| 3230283 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 38.0 | 3.21e-01 | 83.6% | 58.2% |