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alk-exo
Euk-VirClostera_anachoreta_granulovirus
alk-exo__YP_004376317__Clostera_anachoreta_granulovirus__283675
Identity
- Accession:
- YP_004376317 ↗
- Protein ID:
- alk-exo
- Kingdom:
- euk
Quality
86.1
mean pLDDT
Taxonomy
TaxID: 283675
Cluster
View cluster (45 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 266-325
D2
medium
residues 1-77
Domain cluster:
rep: alkaline_exonuclease__YP_009117034__Pseudoplusia_includens_SNPV_IE__1592335__D14-68
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 29.7 | 4.00e-07 | 88.3% | 10.4% |
D3
medium
residues 78-265
Domain cluster:
rep: ALK-EXO__YP_009250080__Urbanus_proteus_nucleopolyhedrovirus__1675866__D84-261
D4
medium
residues 337-401
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2poiA00 | 1.10.1170.10 | Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A | 0.74 | 61.0 | 5.76e-01 | 90.8% | 94.9% |
| 1i3oF00 | 1.10.1170.10 | Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A | 0.72 | 66.0 | 5.77e-01 | 100.0% | 78.5% |
| 1f9xA00 | 1.10.1170.10 | Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A | 0.70 | 60.0 | 5.01e-01 | 98.5% | 68.4% |
| 2l2dA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 40.0 | 3.90e-01 | 75.4% | 58.9% |
| 1tj7A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.62 | 43.0 | 4.20e-01 | 72.3% | 70.4% |
| 3kxpA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.62 | 44.0 | 2.90e-01 | 75.4% | 18.7% |
| 3kp1E02 | 1.10.8.1000 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like | 0.61 | 46.0 | 4.48e-01 | 78.5% | 100.0% |
| 3qitB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 43.0 | 2.84e-01 | 78.5% | 18.4% |
| 2ekfA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.58 | 38.0 | 4.35e-01 | 70.8% | 95.7% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.57 | 41.0 | 3.70e-01 | 75.4% | 79.1% |
| 2hnhA03 | 1.10.10.1600 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Bacterial DNA polymerase III alpha subunit, thumb domain | 0.56 | 38.0 | 3.65e-01 | 92.3% | 59.0% |
| 3p2mA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 40.0 | 2.63e-01 | 75.4% | 37.7% |
| 1ctfA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.56 | 40.0 | 3.99e-01 | 75.4% | 92.6% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.54 | 40.0 | 3.75e-01 | 78.5% | 87.5% |
| 5cbgA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 43.0 | 3.76e-01 | 87.7% | 61.8% |
| 1wtjB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.53 | 42.0 | 3.78e-01 | 89.2% | 71.1% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.53 | 35.0 | 3.24e-01 | 93.8% | 50.0% |
| 1xrhD01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.50 | 43.0 | 3.69e-01 | 93.8% | 69.9% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4094681 | 381.1.1.1 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR | 0.79 | 72.0 | 5.12e-01 | 100.0% | 44.7% |
| 3874336 | 381.1.1.1 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR | 0.77 | 69.0 | 6.27e-01 | 96.9% | 91.8% |
| 3551266 | 381.1.1.1 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR | 0.77 | 68.0 | 5.38e-01 | 96.9% | 60.0% |
| 3557224 | 381.1.1.1 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR | 0.75 | 64.0 | 5.83e-01 | 92.3% | 90.6% |
| 53546 | 5101.1.1.0 ↗ | alpha arrays › C-terminal helical domain of RNA helicase › C-terminal helical domain of RNA helicase › C-terminal helical domain of RNA helicase | 0.72 | 43.0 | 3.33e-01 | 72.3% | 28.7% |
| 3865601 | 381.1.1.1 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR | 0.72 | 63.0 | 5.79e-01 | 98.5% | 92.9% |
| 4303377 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.66 | 43.0 | 4.88e-01 | 70.8% | 89.8% |
| 3716723 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.65 | 48.0 | 3.99e-01 | 81.5% | 46.4% |
| 3957321 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.64 | 44.0 | 3.21e-01 | 72.3% | 61.7% |
| 5061478 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.63 | 42.0 | 4.17e-01 | 76.9% | 64.3% |
| 3374339 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.61 | 47.0 | 3.83e-01 | 84.6% | 93.6% |
| 1227073 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.59 | 43.0 | 2.84e-01 | 78.5% | 18.4% |
| 4972302 | 2498.5.1.1 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 | 0.58 | 42.0 | 4.19e-01 | 78.5% | 80.0% |
| 4995231 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.58 | 42.0 | 3.75e-01 | 76.9% | 87.8% |
| 5030811 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.57 | 40.0 | 3.25e-01 | 72.3% | 42.6% |
| 4013216 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 39.0 | 4.03e-01 | 93.8% | 78.3% |
| 4660026 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.56 | 41.0 | 3.65e-01 | 76.9% | 77.4% |
| 3210445 | 3685.1.1.1 ↗ | a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › FmdA_AmdA | 0.56 | 42.0 | 3.64e-01 | 80.0% | 90.9% |
| 435725 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.56 | 40.0 | 3.48e-01 | 76.9% | 68.6% |
| 3196937 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.55 | 41.0 | 3.74e-01 | 81.5% | 80.0% |
| 3875148 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.55 | 40.0 | 2.59e-01 | 78.5% | 16.5% |
| 3945891 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.55 | 44.0 | 3.39e-01 | 89.2% | 72.0% |
| 3657853 | 101.1.1.210 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Cac1_C | 0.54 | 39.0 | 3.99e-01 | 84.6% | 78.5% |
| 4963324 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.54 | 46.0 | 2.86e-01 | 100.0% | 80.5% |
| 3383276 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 39.0 | 3.57e-01 | 100.0% | 55.8% |
| 4575406 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.52 | 42.0 | 3.02e-01 | 93.8% | 91.6% |
| 3855392 | 109.2.1.24 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › TED_complement | 0.52 | 40.0 | 2.62e-01 | 89.2% | 99.1% |
| 5041027 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 42.0 | 3.75e-01 | 90.8% | 89.5% |
| 4032105 | 1166.1.1.1 ↗ | alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC | 0.51 | 37.0 | 2.81e-01 | 81.5% | 71.1% |
| 3353864 | 101.1.2.212 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cac1_C | 0.51 | 39.0 | 3.90e-01 | 87.7% | 82.9% |