←Back to structures

alk-exo

Euk-Vir

Catopsilia_pomona_nucleopolyhedrovirus

alk-exo__YP_009255278__Catopsilia_pomona_nucleopolyhedrovirus__1850906

Identity

Accession:
YP_009255278 ↗
Protein ID:
alk-exo
Kingdom:
euk

Quality

83.1 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Catopsilia_pomona_nucleopolyhedrovirus

TaxID: 1850906

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-159
PDB
Domain cluster: rep: alkaline_exonuclease__YP_009316046__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591__D1-83_250-276
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01771.24 best Viral_alk_exo 28.7 8.00e-07 73.9% 15.0%
D2 high residues 180-258
PDB
Domain cluster: rep: alkaline_exonuclease__YP_006607785__Apocheima_cinerarium_nucleopolyhedrovirus__307461__D145-250
D3 high residues 278-348
PDB
Domain cluster: rep: alkaline_exonuclease__YP_010086987__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025__D258-315
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ww7B00 3.30.2380.10 Alpha Beta › 2-Layer Sandwich › PF0523-like › CGI121/TPRKB 0.62 36.0 2.74e-01 84.5% 23.3%
1sxjA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 46.0 4.64e-01 83.1% 100.0%
1z9hA03 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 42.0 3.33e-01 80.3% 37.1%
1jkxA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.56 39.0 2.87e-01 74.6% 62.7%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.56 41.0 4.36e-01 80.3% 100.0%
5d1iA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 40.0 3.46e-01 78.9% 100.0%
4rz7A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 3.61e-01 84.5% 94.2%
4oseB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 45.0 3.03e-01 91.5% 40.5%
1go3F01 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.55 33.0 3.51e-01 83.1% 68.3%
3gnjA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 45.0 4.03e-01 97.2% 84.7%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 40.0 3.47e-01 80.3% 89.1%
1rxtC02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.42e-01 97.2% 78.8%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 43.0 2.87e-01 85.9% 40.9%
3jr1A02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.53 45.0 3.36e-01 100.0% 89.8%
1xjuA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.52 42.0 3.34e-01 91.5% 75.6%
2cw1A00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.52 39.0 4.03e-01 84.5% 100.0%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 2.92e-01 94.4% 43.1%
2ja2A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.51 34.0 3.79e-01 76.1% 94.2%
3hisA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.51 32.0 3.09e-01 76.1% 54.3%
3er9B01 1.20.1270.320 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Poxvirus poly(A) polymerase, N domain 0.51 37.0 3.36e-01 80.3% 80.2%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 39.0 3.43e-01 83.1% 61.3%
3d3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 40.0 3.17e-01 90.1% 88.7%
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.50 36.0 3.67e-01 77.5% 77.8%
1jkwA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 39.0 3.50e-01 84.5% 64.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3931141 381.1.1.0 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat 0.81 52.0 5.68e-01 84.5% 79.3%
3696924 381.1.1.2 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Rsm1 0.77 60.0 4.86e-01 84.5% 53.4%
4030229 381.1.1.2 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Rsm1 0.74 58.0 5.64e-01 84.5% 86.3%
3705946 108.1.1.27 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.59 43.0 4.50e-01 76.1% 84.4%
2773918 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 46.0 4.37e-01 85.9% 88.1%
4954653 101.1.1.45 ↗ alpha arrays › HTH › HTH › Three-helical HTH › BrxA 0.55 37.0 3.73e-01 77.5% 68.6%
3720572 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.55 41.0 4.30e-01 81.7% 87.7%
2393515 213.1.1.9 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NMT_C 0.54 46.0 3.41e-01 100.0% 79.5%
4032105 1166.1.1.1 ↗ alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC 0.54 43.0 3.26e-01 90.1% 72.8%
3517198 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.53 40.0 3.83e-01 83.1% 82.4%
5025666 7000.1.1.4 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › PF27234 0.53 45.0 3.53e-01 95.8% 74.2%
3716486 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 36.0 3.56e-01 95.8% 70.7%
5066085 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.51 37.0 3.44e-01 80.3% 58.9%
D4 high residues 361-433
PDB
Domain cluster: rep: alkaline_exonuclease__YP_009117034__Pseudoplusia_includens_SNPV_IE__1592335__D351-412