←Back to structures

alk-exo

Euk-Vir

Trichoplusia_ni_granulovirus_LBIV-12

alk-exo__YP_009506212__Trichoplusia_ni_granulovirus_LBIV-12__1916701

Identity

Accession:: YP_009506212 ↗
Protein ID:: alk-exo
Kingdom:: euk

Quality

75.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Trichoplusia_ni_granulovirus_LBIV-12

TaxID: 1916701

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 400-463

PDB

Domain cluster: rep: alkaline_exonuclease__YP_009117034__Pseudoplusia_includens_SNPV_IE__1592335__D351-412

D2 medium residues 66-132

PDB

Domain cluster: rep: alkaline_exonuclease__YP_003422491__Pseudalatia_unipuncta_granulovirus__36355__D65-132

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	24.5	1.50e-05	95.5%	7.8%

D3 medium residues 164-297

PDB

Domain cluster: rep: ALK-EXO__YP_009250080__Urbanus_proteus_nucleopolyhedrovirus__1675866__D84-261

D4 medium residues 298-395

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00653.28 best	BIR	23.9	7.00e-05	65.3%	91.4%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2poiA00	1.10.1170.10	Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A	0.76	52.0	5.78e-01	70.4%	100.0%
1i3oF00	1.10.1170.10	Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A	0.70	49.0	5.03e-01	71.4%	76.3%
7ldgA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.55	45.0	3.49e-01	88.8%	76.8%
4bemJ00	1.20.120.610	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase	0.51	39.0	3.31e-01	84.7%	100.0%
2bnlC00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.50	34.0	3.15e-01	71.4%	56.7%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3551266	381.1.1.1 ↗	few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR	0.80	60.0	5.41e-01	78.6%	66.9%
3874336	381.1.1.1 ↗	few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR	0.79	58.0	6.22e-01	75.5%	98.8%
3865601	381.1.1.1 ↗	few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR	0.74	54.0	5.79e-01	76.5%	97.6%
4094681	381.1.1.1 ↗	few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR	0.71	57.0	4.58e-01	84.7%	100.0%
4929483	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.60	42.0	3.97e-01	73.5%	73.3%
3237245	3588.1.1.2 ↗	alpha complex topology › RNAi polymerase helical domain › RNAi polymerase helical domain › RNAi polymerase helical domain › RdRP, PF26253	0.56	46.0	3.10e-01	89.8%	90.5%
3621574	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.54	30.0	3.84e-01	70.4%	96.4%
3464575	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.54	42.0	4.25e-01	86.7%	92.0%
4953503	2008.1.1.107 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD	0.54	39.0	3.04e-01	75.5%	76.0%
3407641	106.1.1.8 ↗	alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like	0.52	40.0	3.43e-01	80.6%	51.6%