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alk-exo

Euk-Vir

Neodiprion_sertifer_nucleopolyhedrovirus

alk-exo__YP_025138__Neodiprion_sertifer_nucleopolyhedrovirus__111874

Identity

Accession:: YP_025138 ↗
Protein ID:: alk-exo
Kingdom:: euk

Quality

81.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Gammabaculovirus› Neodiprion_sertifer_nucleopolyhedrovirus

TaxID: 111874

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 61-235

PDB

Domain cluster: rep: MN698246.1__QGZ18180.1__HTVC112P_gp03__00003__D120-243

D2 high residues 246-308

PDB

Domain cluster: rep: alkaline_exonuclease__YP_010086987__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025__D258-315

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3siqA00	1.10.1170.10	Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A	0.77	66.0	5.59e-01	93.7%	65.0%
1i3oF00	1.10.1170.10	Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A	0.71	60.0	5.27e-01	92.1%	63.4%
2poiA00	1.10.1170.10	Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A	0.68	53.0	5.04e-01	88.9%	84.6%
2aklA01	2.20.25.10	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.58	34.0	3.96e-01	71.4%	86.0%
7o06C01	3.30.1470.10	Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II	0.52	41.0	3.65e-01	85.7%	86.8%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3931141	381.1.1.0 ↗	few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat	0.80	57.0	5.94e-01	84.1%	81.0%
154260	381.1.1.1 ↗	few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR	0.78	65.0	5.43e-01	92.1%	57.8%
166845	381.1.1.1 ↗	few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR	0.75	67.0	5.61e-01	96.8%	68.0%
3865601	381.1.1.1 ↗	few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR	0.74	66.0	6.02e-01	100.0%	80.0%
3535885	386.1.1.226 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Znf-C2H2_ZNF142	0.72	36.0	4.50e-01	81.0%	82.9%
3400423	3006.1.1.3 ↗	a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › AD	0.59	44.0	4.13e-01	84.1%	88.7%
4928885	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.58	37.0	4.24e-01	71.4%	91.1%
3621574	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.56	40.0	4.25e-01	93.7%	87.3%
3580336	109.2.1.24 ↗	alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › TED_complement	0.54	47.0	2.99e-01	100.0%	25.0%
4263049	2485.1.1.44 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_7	0.54	43.0	3.83e-01	92.1%	94.0%

D3 medium residues 1-60

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	21.2	1.50e-04	85.0%	6.3%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1lujB01	1.10.10.490	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT	0.63	49.0	5.14e-01	88.3%	98.1%
3zc4A01	1.20.120.1610	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.59	46.0	4.08e-01	86.7%	95.6%
6v7xB02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	41.0	4.20e-01	76.7%	92.9%
1af7A01	1.10.155.10	Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain	0.54	35.0	3.19e-01	70.0%	50.0%
2m46A00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.51	37.0	3.02e-01	80.0%	90.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3967741	564.1.1.3 ↗	alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › DUF4880	0.55	42.0	4.27e-01	88.3%	90.0%

D4 medium residues 309-399

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1i3oF00	1.10.1170.10	Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A	0.82	56.0	5.62e-01	70.3%	78.5%
3siqA00	1.10.1170.10	Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A	0.79	55.0	5.25e-01	71.4%	92.2%
1f9xA00	1.10.1170.10	Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A	0.75	53.0	4.88e-01	73.6%	70.9%
3draB00	1.50.10.20	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.53	37.0	2.55e-01	74.7%	98.9%
3dfzA02	1.10.8.610	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › SirC, precorrin-2 dehydrogenase, C-terminal helical domain-like	0.50	28.0	3.01e-01	78.0%	62.2%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3931141	381.1.1.0 ↗	few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat	0.74	46.0	5.72e-01	76.9%	100.0%
3492215	381.1.1.1 ↗	few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR	0.68	60.0	5.90e-01	95.6%	100.0%