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alkaline_exonuclease

Euk-Vir

Pseudoplusia_includens_SNPV_IE

alkaline_exonuclease__YP_009117034__Pseudoplusia_includens_SNPV_IE__1592335

Identity

Accession:
YP_009117034 ↗
Protein ID:
alkaline_exonuclease
Kingdom:
euk

Quality

87.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Pseudoplusia_includens_SNPV_IE

TaxID: 1592335

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-253
PDB
Domain cluster: rep: ALK-EXO__YP_009250080__Urbanus_proteus_nucleopolyhedrovirus__1675866__D84-261
D2 high residues 265-332
PDB
Domain cluster: rep: alkaline_exonuclease__YP_010086987__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025__D258-315
D3 high residues 351-412
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1i3oF00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.78 69.0 5.98e-01 96.8% 71.0%
3siqA00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.77 70.0 5.85e-01 100.0% 89.3%
2poiA00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.77 67.0 6.21e-01 96.8% 96.2%
1f9xA00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.75 65.0 5.33e-01 100.0% 65.0%
1gteA01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 3.84e-01 95.2% 89.9%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 35.0 2.84e-01 71.0% 58.5%
2qpzA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 35.0 3.06e-01 74.2% 63.1%
1zbtA02 3.30.70.1660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 2.94e-01 85.5% 90.2%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.50 35.0 3.05e-01 75.8% 63.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
154260 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.82 75.0 6.12e-01 100.0% 68.8%
3874336 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.81 72.0 6.45e-01 98.4% 89.4%
3557224 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.80 73.0 6.52e-01 100.0% 90.6%
3551266 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.80 72.0 5.56e-01 98.4% 58.5%
166845 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.80 72.0 6.02e-01 100.0% 75.7%
4094681 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.80 72.0 5.05e-01 98.4% 42.5%
426822 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.79 70.0 5.79e-01 98.4% 84.3%
4499664 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.78 69.0 6.51e-01 98.4% 100.0%
3865601 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.78 68.0 6.14e-01 96.8% 89.4%
3993705 381.1.1.2 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Rsm1 0.76 64.0 5.37e-01 93.5% 89.5%
3492215 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.76 68.0 5.80e-01 100.0% 68.4%
3171946 381.1.1.0 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat 0.71 60.0 5.18e-01 95.2% 81.8%
3260512 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.68 49.0 5.13e-01 75.8% 96.4%
3260511 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.64 47.0 4.96e-01 79.0% 96.4%
3822828 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.62 49.0 4.89e-01 88.7% 93.8%
5047273 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 37.0 4.42e-01 71.0% 97.5%
3899324 376.1.6.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 0.58 51.0 4.55e-01 100.0% 74.4%
3937591 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.57 41.0 4.30e-01 88.7% 85.5%
3235789 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.55 41.0 4.34e-01 87.1% 90.9%
3584026 376.1.6.11 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR, IBR_1 0.55 46.0 3.36e-01 100.0% 35.0%
3808540 376.1.6.9 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › PF26200 0.55 44.0 3.27e-01 98.4% 35.3%
3686965 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.55 40.0 4.20e-01 83.9% 89.1%
4011241 376.1.6.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain 0.54 40.0 4.21e-01 95.2% 92.7%
3936129 3006.1.1.0 ↗ a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain 0.54 38.0 3.78e-01 79.0% 88.4%
5059258 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.53 37.0 2.58e-01 79.0% 20.9%
3259856 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.53 41.0 4.13e-01 85.5% 93.8%
3633967 376.1.6.9 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › PF26200 0.53 44.0 4.02e-01 100.0% 67.1%
3728776 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.53 42.0 4.11e-01 88.7% 88.6%
3723241 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.53 42.0 4.29e-01 100.0% 91.7%
3262965 376.1.4.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.53 40.0 3.99e-01 98.4% 79.7%
3750501 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.53 41.0 3.95e-01 87.1% 75.7%
3537468 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.53 41.0 3.92e-01 87.1% 78.7%
3270748 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.52 41.0 4.11e-01 95.2% 86.2%
5025865 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.52 35.0 3.03e-01 71.0% 67.3%
3891437 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.52 37.0 3.91e-01 88.7% 90.9%
4927603 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.51 39.0 2.91e-01 85.5% 47.1%
None — 0.51 41.0 2.94e-01 100.0% 58.8%
3266250 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.51 38.0 3.90e-01 85.5% 85.0%
3720616 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.50 40.0 3.87e-01 100.0% 80.0%
D4 medium residues 14-68
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01771.24 best Viral_alk_exo 23.3 3.50e-05 98.2% 5.6%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bqyA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 48.0 3.59e-01 100.0% 46.7%
4hn9A02 1.20.58.2180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 37.0 3.54e-01 76.4% 92.6%
1hx8A01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 42.0 3.45e-01 100.0% 45.8%
6tmvB01 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.52 40.0 2.99e-01 98.2% 30.0%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.55e-01 96.4% 93.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5042046 5045.1.1.3 ↗ alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › V_ATPase_I 0.57 40.0 2.61e-01 76.4% 15.9%
5054497 3290.1.1.0 ↗ alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B 0.53 43.0 3.97e-01 98.2% 75.0%