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alkaline_exonuclease

Euk-Vir

Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus

alkaline_exonuclease__YP_009316046__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591

Identity

Accession:
YP_009316046 ↗
Protein ID:
alkaline_exonuclease
Kingdom:
euk

Quality

84.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus

TaxID: 268591

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 277-343
PDB
Domain cluster: rep: alkaline_exonuclease__YP_010086987__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025__D258-315
D2 high residues 353-418
PDB
Domain cluster: rep: alkaline_exonuclease__YP_009117034__Pseudoplusia_includens_SNPV_IE__1592335__D351-412
D3 medium residues 1-83_250-276
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01771.24 best Viral_alk_exo 23.8 2.40e-05 84.5% 6.9%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 33.0 3.04e-01 76.4% 46.1%
2ii2A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.51 31.0 3.24e-01 81.8% 64.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3993764 109.4.1.1150 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_INTS8 0.60 43.0 3.63e-01 73.6% 77.8%
3816459 3684.1.1.10 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › DUF677 0.52 42.0 3.54e-01 89.1% 78.5%
3710472 604.3.1.11 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.51 41.0 3.19e-01 87.3% 51.2%
3276672 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.50 39.0 3.73e-01 83.6% 74.6%
3269731 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.50 38.0 3.81e-01 82.7% 95.7%
D4 medium residues 84-249
PDB
Domain cluster: rep: ALK-EXO__YP_009250080__Urbanus_proteus_nucleopolyhedrovirus__1675866__D84-261