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alkaline_exonuclease

Euk-Vir

Spodoptera_littoralis_nucleopolyhedrovirus

alkaline_exonuclease__YP_009505914__Spodoptera_littoralis_nucleopolyhedrovirus__10456

Identity

Accession:
YP_009505914 ↗
Protein ID:
alkaline_exonuclease
Kingdom:
euk

Quality

83.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_littoralis_nucleopolyhedrovirus

TaxID: 10456

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 65-249
PDB
Domain cluster: rep: ALK-EXO__YP_009250080__Urbanus_proteus_nucleopolyhedrovirus__1675866__D84-261
D2 high residues 261-339
PDB
Domain cluster: rep: alkaline_exonuclease__YP_010086987__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025__D258-315
D3 high residues 357-414
PDB
Domain cluster: rep: alkaline_exonuclease__YP_009117034__Pseudoplusia_includens_SNPV_IE__1592335__D351-412
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f3hB00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.79 70.0 5.33e-01 100.0% 55.6%
1i3oF00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.76 67.0 5.75e-01 100.0% 65.6%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 38.0 3.20e-01 77.6% 55.1%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3783957 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.81 73.0 6.17e-01 100.0% 90.5%
3931141 381.1.1.0 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat 0.81 70.0 7.08e-01 100.0% 94.8%
3938555 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.81 71.0 6.14e-01 98.3% 94.4%
3993705 381.1.1.2 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Rsm1 0.81 72.0 5.90e-01 100.0% 88.6%
3623927 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.79 71.0 6.19e-01 98.3% 100.0%
3392094 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.79 70.0 5.35e-01 100.0% 56.4%
3623926 381.1.1.0 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat 0.78 67.0 5.95e-01 96.6% 100.0%
4024808 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.77 69.0 6.17e-01 100.0% 92.5%
3510310 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.70 51.0 4.71e-01 79.3% 68.0%
3390804 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.68 54.0 5.57e-01 87.9% 100.0%
3413447 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 51.0 5.23e-01 84.5% 96.4%
3405158 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 51.0 4.74e-01 84.5% 72.0%
3666422 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.67 53.0 4.93e-01 87.9% 79.5%
3887402 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.66 50.0 4.97e-01 82.8% 86.7%
3324892 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.66 51.0 4.33e-01 84.5% 55.1%
3563732 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.66 49.0 5.04e-01 82.8% 96.4%
3260512 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.65 51.0 5.21e-01 86.2% 96.4%
3390799 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 50.0 4.82e-01 87.9% 82.9%
3389846 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 50.0 4.86e-01 87.9% 86.2%
3922099 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 49.0 4.98e-01 87.9% 100.0%
3940506 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.61 43.0 4.56e-01 77.6% 96.0%
3543340 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.61 44.0 4.50e-01 79.3% 94.4%
4639076 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 43.0 3.77e-01 79.3% 58.9%
3867404 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.59 44.0 4.38e-01 82.8% 88.3%
4019237 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.59 44.0 3.02e-01 82.8% 21.7%
3992836 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 46.0 4.41e-01 91.4% 87.1%
3666958 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 42.0 3.93e-01 79.3% 71.2%
3171860 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 44.0 4.52e-01 91.4% 100.0%
D4 medium residues 12-64
PDB
Domain cluster: rep: alkaline_exonuclease__YP_009117034__Pseudoplusia_includens_SNPV_IE__1592335__D14-68