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alkaline_nuclease

Euk-Vir

Choristoneura_rosaceana_nucleopolyhedrovirus

alkaline_nuclease__YP_008378377__Choristoneura_rosaceana_nucleopolyhedrovirus__58094

Identity

Accession:
YP_008378377 ↗
Protein ID:
alkaline_nuclease
Kingdom:
euk

Quality

85.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Choristoneura_rosaceana_nucleopolyhedrovirus

TaxID: 58094

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 265-334
PDB
Domain cluster: rep: alkaline_exonuclease__YP_010086987__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025__D258-315
D2 high residues 353-416
PDB
Domain cluster: rep: alkaline_exonuclease__YP_009117034__Pseudoplusia_includens_SNPV_IE__1592335__D351-412
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2poiA00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.82 68.0 6.39e-01 90.6% 94.9%
1f3hB00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.81 70.0 5.39e-01 93.8% 60.0%
3siqA00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.79 70.0 5.99e-01 98.4% 91.3%
1i3oF00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.78 66.0 5.79e-01 92.2% 71.0%
1f9xA00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.77 68.0 5.60e-01 100.0% 68.4%
1iqzA00 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 38.0 3.58e-01 76.6% 49.4%
4efcA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.55 36.0 3.67e-01 73.4% 68.9%
6ukcA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 46.0 3.78e-01 100.0% 91.0%
3hg9A01 3.30.1300.90 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › PilM protein, N-terminal domain 0.54 32.0 3.06e-01 95.3% 48.1%
4yf2A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.52 44.0 3.60e-01 100.0% 90.0%
2xn1A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.51 34.0 2.30e-01 70.3% 48.1%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3874336 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.85 73.0 6.59e-01 92.2% 88.2%
3865601 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.83 71.0 6.37e-01 92.2% 89.4%
3938555 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.82 66.0 5.86e-01 85.9% 96.7%
166845 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.82 74.0 6.23e-01 98.4% 76.7%
4499664 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.82 71.0 6.69e-01 93.8% 100.0%
3740625 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.79 71.0 5.52e-01 98.4% 83.8%
3220527 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.79 69.0 5.39e-01 95.3% 61.7%
3623927 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.78 65.0 5.80e-01 87.5% 100.0%
4024808 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.78 68.0 6.25e-01 93.8% 97.5%
3293545 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.77 68.0 5.84e-01 93.8% 93.7%
3696924 381.1.1.2 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Rsm1 0.77 69.0 5.38e-01 98.4% 92.5%
3255526 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.77 67.0 5.89e-01 93.8% 98.9%
3309853 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.76 64.0 5.77e-01 90.6% 100.0%
3216260 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.76 66.0 5.60e-01 93.8% 88.0%
3733582 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.76 68.0 5.92e-01 98.4% 98.9%
3863964 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.73 66.0 5.75e-01 98.4% 98.9%
3903603 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 46.0 4.44e-01 75.0% 72.0%
4967993 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.64 43.0 3.93e-01 70.3% 66.3%
4139420 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.62 44.0 4.25e-01 73.4% 98.6%
4632217 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.60 45.0 4.26e-01 78.1% 100.0%
3942099 605.1.1.209 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › AI-2E_transport 0.58 40.0 3.45e-01 71.9% 46.0%
3936249 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 35.0 4.00e-01 82.8% 100.0%
4186968 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.56 41.0 3.33e-01 79.7% 83.1%
4000562 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.53 37.0 3.82e-01 85.9% 78.3%
5035991 3567.1.1.112 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › AI-2E_transport 0.52 41.0 3.07e-01 85.9% 70.6%
3277822 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.51 38.0 2.98e-01 79.7% 88.3%
4013220 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.51 39.0 2.55e-01 82.8% 78.3%
3409172 331.23.1.3 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS11_C 0.50 35.0 3.32e-01 76.6% 78.8%
D3 medium residues 1-77
PDB
Domain cluster: rep: alkaline_exonuclease__YP_009316046__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591__D1-83_250-276
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01771.24 best Viral_alk_exo 21.2 1.50e-04 93.5% 4.8%
D4 medium residues 78-255
PDB
Domain cluster: rep: ALK-EXO__YP_009250080__Urbanus_proteus_nucleopolyhedrovirus__1675866__D84-261