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alpha_2_protein
Euk-VirAdelaide_River_virus
alpha_2_protein__YP_009177245__Adelaide_River_virus__31612
Identity
- Accession:
- YP_009177245 ↗
- Protein ID:
- alpha_2_protein
- Kingdom:
- euk
Quality
74.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Ephemerovirus›
Adelaide_River_virus
TaxID: 31612
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-99
Domain cluster:
rep: alpha_2_protein__YP_006200963__Obodhiang_virus__380160__D3-98
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.58 | 49.0 | 3.27e-01 | 94.8% | 70.5% |
| 3b8pA00 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.55 | 48.0 | 3.85e-01 | 100.0% | 95.7% |
| 2cg4A02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.55 | 39.0 | 4.12e-01 | 100.0% | 86.9% |
| 4g6vB00 | 3.30.70.2920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 48.0 | 4.71e-01 | 99.0% | 95.1% |
| 1z2zA01 | 3.30.2350.20 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, catalytic domain | 0.53 | 38.0 | 2.87e-01 | 74.2% | 57.7% |
| 2b3tB01 | 6.10.140.1980 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 33.0 | 3.82e-01 | 93.8% | 92.3% |
| 1dt9A01 | 3.30.960.10 | Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 | 0.52 | 47.0 | 4.65e-01 | 99.0% | 99.0% |
| 1uw4A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 41.0 | 4.19e-01 | 99.0% | 93.4% |
| 2ypyA00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.52 | 41.0 | 3.76e-01 | 100.0% | 63.4% |
| 2anrA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.51 | 37.0 | 3.97e-01 | 92.8% | 92.5% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 39.0 | 4.03e-01 | 100.0% | 89.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3338586 | 632.1.1.12 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › GAUT_1 | 0.63 | 43.0 | 4.53e-01 | 72.2% | 75.6% |
| 60289 | 4125.1.1.0 ↗ | alpha superhelices › BH3980-like › BH3980-like › BH3980-like | 0.57 | 38.0 | 4.17e-01 | 89.7% | 82.7% |
| 5030211 | 832.1.1.1 ↗ | a+b three layers › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › eRF1_1 | 0.57 | 51.0 | 4.56e-01 | 99.0% | 77.8% |
| 3929943 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.57 | 39.0 | 4.12e-01 | 100.0% | 77.8% |
| 3507889 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.55 | 44.0 | 4.55e-01 | 100.0% | 96.7% |
| 4854088 | 4.23.1.1 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › eRF1_1 | 0.54 | 49.0 | 4.33e-01 | 100.0% | 74.5% |
| 3538483 | 328.6.1.2 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › RTC | 0.54 | 42.0 | 3.19e-01 | 86.6% | 91.9% |
| 3583805 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.54 | 45.0 | 4.59e-01 | 100.0% | 94.7% |
| 3798117 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.52 | 43.0 | 4.33e-01 | 100.0% | 89.0% |
| 4022825 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 44.0 | 4.30e-01 | 100.0% | 86.7% |
| 3699728 | 878.1.1.0 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 | 0.51 | 40.0 | 3.82e-01 | 86.6% | 96.7% |
| 3230479 | 304.112.1.3 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoN | 0.51 | 41.0 | 4.16e-01 | 100.0% | 90.0% |
| 4392983 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.51 | 40.0 | 2.95e-01 | 87.6% | 93.3% |