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amazon_plume_scaffold_4_prodigal-single.1__X__X__00007
Bact-Viramazon_plume_scaffold_4_prodigal-single.1__X__X__00007
Identity
- Kingdom:
- phage
Quality
77.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 56-152
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.79 | 64.0 | 6.66e-01 | 100.0% | 93.3% |
| 6o38A01 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 66.0 | 6.80e-01 | 100.0% | 97.8% |
| 1qexA02 | 2.60.120.640 | Mainly Beta › Sandwich › Jelly Rolls › gp9 | 0.76 | 70.0 | 6.88e-01 | 100.0% | 93.2% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 65.0 | 6.24e-01 | 100.0% | 85.3% |
| 1id2A00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.66 | 44.0 | 4.32e-01 | 75.3% | 62.3% |
| 1sddB02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.64 | 47.0 | 4.34e-01 | 77.3% | 76.8% |
| 1bxvA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.62 | 42.0 | 4.31e-01 | 74.2% | 73.6% |
| 6hbeA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.61 | 49.0 | 4.45e-01 | 87.6% | 82.0% |
| 1vl5C00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 43.0 | 3.35e-01 | 75.3% | 92.5% |
| 3abgB01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.58 | 46.0 | 3.90e-01 | 84.5% | 67.3% |
| 1a4aA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.58 | 45.0 | 4.15e-01 | 83.5% | 79.1% |
| 1m6eX02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 46.0 | 3.64e-01 | 91.8% | 83.2% |
| 2ld4A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 47.0 | 3.97e-01 | 96.9% | 92.4% |
| 4gm6A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 40.0 | 2.84e-01 | 77.3% | 33.1% |
| 4f54A00 | 3.30.160.670 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 42.0 | 3.51e-01 | 85.6% | 68.3% |
| 4bxsV03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 48.0 | 3.27e-01 | 96.9% | 67.8% |
| 2ux6A00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 42.0 | 3.89e-01 | 83.5% | 72.1% |
| 1f56A00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.52 | 34.0 | 3.57e-01 | 90.7% | 72.5% |
| 2xwtC00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.51 | 44.0 | 3.43e-01 | 100.0% | 54.3% |
| 1yezA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 30.0 | 3.53e-01 | 89.7% | 85.3% |
| 7chuA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.50 | 44.0 | 3.02e-01 | 100.0% | 30.3% |
| 5oj2B05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 34.0 | 3.46e-01 | 93.8% | 70.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 184462 | 520.1.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 | 0.76 | 70.0 | 5.75e-01 | 100.0% | 57.1% |
| 1070458 | 520.1.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 | 0.76 | 70.0 | 5.84e-01 | 100.0% | 63.1% |
| 185692 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.73 | 65.0 | 6.24e-01 | 100.0% | 85.3% |
| 5071024 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.63 | 45.0 | 4.21e-01 | 76.3% | 96.8% |
| 4929501 | 3156.1.1.13 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 | 0.60 | 45.0 | 4.39e-01 | 81.4% | 73.3% |
| 4918951 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.60 | 46.0 | 4.13e-01 | 83.5% | 73.4% |
| 3272273 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.58 | 41.0 | 4.21e-01 | 75.3% | 76.7% |
| 3964913 | 207.2.1.10 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin | 0.55 | 50.0 | 4.34e-01 | 100.0% | 73.1% |
| 3727537 | 10.32.1.245 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7590 | 0.54 | 44.0 | 4.07e-01 | 93.8% | 74.6% |
| None | — | 0.51 | 40.0 | 3.77e-01 | 94.8% | 69.6% |