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amazon_plume_scaffold_4_prodigal-single.1__X__X__00014

Bact-Vir

amazon_plume_scaffold_4_prodigal-single.1__X__X__00014

Identity

Kingdom:
phage

Quality

54.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 967-1131
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 31.0 3.92e-01 99.4% 100.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.50 19.0 2.72e-01 94.5% 69.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014609 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.56 24.0 3.52e-01 96.4% 96.9%
3588994 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.52 23.0 3.22e-01 94.5% 100.0%
2512670 244.1.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.51 30.0 3.73e-01 99.4% 98.9%
5010214 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.50 25.0 3.15e-01 98.8% 81.1%
D2 medium residues 25-98
PDB
D3 medium residues 484-646
PDB
D4 medium residues 678-966
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oq1A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 19.0 3.05e-01 98.6% 85.1%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 19.0 3.03e-01 98.6% 89.1%
3qdhA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 22.0 3.30e-01 97.9% 92.2%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5033998 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 21.0 3.18e-01 99.0% 85.5%
1290861 11.1.4.36 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.53 19.0 3.05e-01 98.6% 85.1%
3246923 11.1.5.139 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF30205 0.51 18.0 2.86e-01 96.9% 80.0%
3969875 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 20.0 3.03e-01 97.9% 88.2%