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amazon_plume_scaffold_4_prodigal-single.1__X__X__00015
Bact-Viramazon_plume_scaffold_4_prodigal-single.1__X__X__00015
Identity
- Kingdom:
- phage
Quality
51.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 641-713
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yvsA01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.58 | 36.0 | 3.09e-01 | 100.0% | 40.4% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.54 | 36.0 | 2.83e-01 | 100.0% | 29.9% |
| 2irmA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.54 | 44.0 | 3.00e-01 | 98.6% | 97.6% |
| 1hezE00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 34.0 | 3.65e-01 | 100.0% | 85.2% |
| 5zi7A02 | 3.30.2010.30 | Alpha Beta › 2-Layer Sandwich › Zincin-like › | 0.50 | 31.0 | 3.06e-01 | 90.4% | 54.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1844216 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.64 | 38.0 | 4.43e-01 | 100.0% | 86.3% |
| 5747 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.63 | 39.0 | 4.32e-01 | 100.0% | 83.3% |
| 4931464 | 822.3.1.0 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 | 0.63 | 44.0 | 4.43e-01 | 100.0% | 72.0% |
| 4463006 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.62 | 36.0 | 4.34e-01 | 100.0% | 93.3% |
| 4030677 | 1116.1.1.0 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain | 0.55 | 37.0 | 3.07e-01 | 100.0% | 34.7% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.53 | 32.0 | 3.79e-01 | 100.0% | 97.8% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.52 | 32.0 | 3.79e-01 | 100.0% | 100.0% |
D2
high
residues 1216-1327