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amazon_plume_scaffold_4_prodigal-single.1__X__X__00045

Bact-Vir

amazon_plume_scaffold_4_prodigal-single.1__X__X__00045

Identity

Kingdom:
phage

Quality

83.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-73
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.87 56.0 6.57e-01 89.7% 93.8%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 60.0 6.33e-01 91.2% 87.1%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.80 60.0 6.63e-01 100.0% 100.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.76 61.0 6.31e-01 92.6% 92.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 58.0 6.03e-01 97.1% 88.7%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 55.0 6.12e-01 89.7% 100.0%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 59.0 5.87e-01 97.1% 84.5%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 59.0 5.83e-01 97.1% 84.7%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 54.0 5.60e-01 89.7% 90.6%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 5.04e-01 89.7% 73.1%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 57.0 5.69e-01 98.5% 90.0%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 51.0 5.44e-01 89.7% 95.0%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.35e-01 89.7% 94.5%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.65 48.0 4.19e-01 92.6% 50.5%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 53.0 5.41e-01 89.7% 92.5%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 4.17e-01 100.0% 42.4%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 43.0 4.63e-01 83.8% 87.5%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 49.0 5.03e-01 91.2% 87.9%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.62 48.0 3.67e-01 88.2% 86.4%
4js8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 48.0 4.34e-01 82.4% 93.3%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 51.0 4.06e-01 95.6% 78.7%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.50e-01 92.6% 72.7%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.61 42.0 4.55e-01 83.8% 87.5%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.61 51.0 4.04e-01 92.6% 48.2%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 40.0 4.60e-01 88.2% 93.9%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.60 54.0 4.32e-01 100.0% 70.5%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.60 51.0 4.07e-01 92.6% 48.5%
1ss4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 42.0 3.32e-01 76.5% 81.2%
3itwA02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 33.0 3.57e-01 79.4% 67.9%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.72e-01 94.1% 95.6%
3vcxA02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 31.0 3.43e-01 80.9% 67.9%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 44.0 4.36e-01 89.7% 83.1%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 40.0 4.31e-01 85.3% 94.8%
1y8tA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 42.0 3.84e-01 83.8% 77.3%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.28e-01 91.2% 63.1%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 41.0 2.92e-01 85.3% 77.0%
3e5dA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 37.0 3.10e-01 76.5% 84.0%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 3.46e-01 89.7% 98.4%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.43e-01 100.0% 83.4%
8f5pC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.64e-01 85.3% 24.2%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.34e-01 82.4% 81.5%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.08e-01 97.1% 66.5%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.49e-01 88.2% 61.5%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 2.57e-01 91.2% 38.5%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.90 65.0 7.19e-01 92.6% 92.7%
3326980 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.87 64.0 6.75e-01 100.0% 86.7%
5052257 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 63.0 6.64e-01 100.0% 88.3%
4071917 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.80 52.0 5.86e-01 91.2% 90.0%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.80 58.0 5.97e-01 88.2% 80.0%
3559960 2006.1.6.66 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.80 65.0 6.47e-01 98.5% 84.3%
3591224 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 54.0 6.15e-01 89.7% 96.0%
4000622 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.79 59.0 4.73e-01 88.2% 44.2%
3581817 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.78 59.0 6.10e-01 89.7% 83.1%
3942573 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 58.0 6.26e-01 92.6% 91.4%
4284709 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.78 54.0 5.88e-01 94.1% 89.1%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.77 59.0 5.22e-01 92.6% 57.9%
3855974 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.76 65.0 6.26e-01 100.0% 82.7%
4605602 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 63.0 6.49e-01 100.0% 93.8%
3794500 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.75 60.0 4.32e-01 97.1% 31.4%
3886492 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.75 63.0 6.14e-01 95.6% 82.7%
4241924 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.74 61.0 5.49e-01 97.1% 66.7%
4629735 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 61.0 6.26e-01 97.1% 92.3%
4593997 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 60.0 6.12e-01 97.1% 90.8%
5022848 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 60.0 6.33e-01 97.1% 98.3%
4943273 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 60.0 6.20e-01 95.6% 92.3%
4971532 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 59.0 5.92e-01 97.1% 84.3%
4300449 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.72 60.0 6.12e-01 97.1% 92.3%
5075469 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.72 58.0 5.95e-01 97.1% 90.8%
5073368 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.82e-01 97.1% 85.7%
5031165 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.70 59.0 5.89e-01 97.1% 88.6%
3411042 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 54.0 5.74e-01 88.2% 95.0%
4132516 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.69 60.0 5.71e-01 100.0% 80.0%
3794445 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 64.0 6.05e-01 100.0% 85.0%
3679362 4.1.1.351 beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 0.69 58.0 5.42e-01 92.6% 97.6%
3761318 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.68 55.0 5.50e-01 92.6% 84.3%
2552660 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.67 55.0 4.53e-01 91.2% 58.3%
3575435 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.67 54.0 4.82e-01 86.8% 62.1%
3246255 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 51.0 5.08e-01 89.7% 80.0%
3687350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.94e-01 89.7% 90.9%
4505316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.22e-01 97.1% 95.0%
1293704 206.1.1.13 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.64 52.0 3.52e-01 91.2% 43.6%
3205517 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 54.0 5.21e-01 91.2% 86.7%
3598250 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 51.0 3.51e-01 92.6% 52.5%
3585510 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.77e-01 89.7% 72.9%
4190716 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 48.0 4.00e-01 82.4% 70.4%
4207556 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.62 52.0 5.15e-01 92.6% 98.6%
3592969 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 50.0 3.37e-01 92.6% 41.7%
3254671 206.1.1.13 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.61 50.0 3.47e-01 92.6% 48.8%
5037289 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.61 42.0 4.41e-01 83.8% 81.7%
3897512 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 51.0 4.85e-01 92.6% 98.8%
6457 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.60 51.0 4.03e-01 92.6% 47.1%
3791476 206.1.1.13 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.59 47.0 3.29e-01 91.2% 43.5%
3933337 109.4.1.2535 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Alpha_kinase 0.59 47.0 2.90e-01 91.2% 23.8%
3847699 206.1.1.13 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.59 47.0 3.19e-01 91.2% 39.0%
3494230 385.1.1.0 few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines 0.59 42.0 4.17e-01 82.4% 71.4%
3481413 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 46.0 3.30e-01 91.2% 47.5%
5061147 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.52e-01 97.1% 71.6%
3468143 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 3.59e-01 91.2% 73.8%
3802091 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.57 47.0 3.68e-01 91.2% 81.4%
5033213 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 40.0 3.41e-01 76.5% 92.5%
4041866 3699.1.1.0 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.56 42.0 4.33e-01 85.3% 86.2%
3961395 2003.1.2.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.56 48.0 2.86e-01 97.1% 30.1%
5039871 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 44.0 3.01e-01 97.1% 23.8%
4001239 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.73e-01 89.7% 74.7%
3616512 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.52 40.0 2.67e-01 92.6% 78.7%
3504293 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.51 38.0 2.65e-01 83.8% 71.3%
4881988 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.50 39.0 3.79e-01 88.2% 83.3%