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amazon_plume_scaffold_4_prodigal-single.1__X__X__00090
Bact-Viramazon_plume_scaffold_4_prodigal-single.1__X__X__00090
Identity
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-60
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tw6A06 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 39.0 | 4.10e-01 | 86.2% | 63.0% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.65 | 41.0 | 3.71e-01 | 93.1% | 45.7% |
| 2nscA01 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.61 | 46.0 | 4.29e-01 | 86.2% | 100.0% |
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.61 | 44.0 | 2.58e-01 | 79.3% | 10.6% |
| 4dzoA02 | 3.30.457.60 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.60 | 41.0 | 3.77e-01 | 70.7% | 100.0% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.59 | 47.0 | 4.00e-01 | 91.4% | 88.3% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.59 | 46.0 | 3.22e-01 | 94.8% | 26.2% |
| 1kn1B00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.59 | 45.0 | 3.20e-01 | 81.0% | 32.9% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.59 | 44.0 | 2.91e-01 | 86.2% | 93.4% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.58 | 48.0 | 3.07e-01 | 98.3% | 87.8% |
| 3ewiB00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.56 | 47.0 | 3.50e-01 | 96.6% | 96.8% |
| 4nlcA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 44.0 | 2.93e-01 | 91.4% | 64.9% |
| 3u7iA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.55 | 47.0 | 3.20e-01 | 96.6% | 93.6% |
| 3rhaA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 49.0 | 2.89e-01 | 100.0% | 96.1% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.53 | 45.0 | 3.29e-01 | 94.8% | 87.9% |
| 2yg3A02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.53 | 41.0 | 3.03e-01 | 93.1% | 31.1% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.52 | 45.0 | 3.25e-01 | 96.6% | 58.7% |
| 3gd0A01 | 2.60.110.10 | Mainly Beta › Sandwich › Thaumatin › Thaumatin | 0.51 | 41.0 | 2.79e-01 | 94.8% | 86.8% |
| 2xnjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 43.0 | 3.55e-01 | 94.8% | 75.0% |
| 1wgrA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 30.0 | 2.69e-01 | 87.9% | 39.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.73 | 45.0 | 2.76e-01 | 100.0% | 10.9% | |
| 3814341 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.65 | 38.0 | 3.90e-01 | 98.3% | 60.0% |
| 3393570 | 102.1.1.61 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › NCD1 | 0.62 | 36.0 | 3.12e-01 | 98.3% | 37.8% |
| 3512849 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.61 | 41.0 | 4.09e-01 | 74.1% | 66.7% |
| 1238064 | 101.1.1.20 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A | 0.61 | 49.0 | 4.37e-01 | 93.1% | 89.5% |
| 4026519 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.58 | 51.0 | 3.90e-01 | 98.3% | 92.6% |
| 3359944 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.58 | 35.0 | 3.60e-01 | 93.1% | 61.8% |
| 3177693 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 47.0 | 2.87e-01 | 93.1% | 62.6% |
| 4021531 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 37.0 | 3.17e-01 | 70.7% | 44.9% |
| 4014289 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 36.0 | 2.76e-01 | 93.1% | 25.6% |
| 4945644 | 876.1.1.10 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF1015 | 0.54 | 45.0 | 3.18e-01 | 94.8% | 45.4% |
| 2473158 | 5093.1.1.1 ↗ | a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Fusion_gly | 0.54 | 44.0 | 3.28e-01 | 96.6% | 78.0% |
| 4457118 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.53 | 42.0 | 2.76e-01 | 87.9% | 79.9% |
| 3495764 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.53 | 33.0 | 2.41e-01 | 98.3% | 19.5% |
| 5051150 | 2003.1.2.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO | 0.53 | 41.0 | 2.65e-01 | 94.8% | 25.2% |
| 3467884 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 41.0 | 2.67e-01 | 94.8% | 29.9% |
| 4969538 | 4020.1.1.0 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes | 0.52 | 41.0 | 3.22e-01 | 96.6% | 43.2% |
| 3177990 | 4015.1.1.1 ↗ | alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 | 0.52 | 44.0 | 2.87e-01 | 98.3% | 21.2% |
| 3626178 | 592.7.1.1 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 | 0.52 | 40.0 | 3.57e-01 | 89.7% | 60.0% |
| 3969863 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.51 | 35.0 | 3.40e-01 | 72.4% | 64.7% |
| 3288067 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.51 | 46.0 | 3.70e-01 | 100.0% | 83.6% |
| 4886572 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.51 | 36.0 | 2.95e-01 | 77.6% | 79.2% |
| 3163963 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.51 | 45.0 | 3.60e-01 | 96.6% | 77.3% |
| 4203031 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 34.0 | 2.58e-01 | 70.7% | 69.7% |
| 5050197 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.50 | 33.0 | 3.09e-01 | 94.8% | 50.7% |