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amazon_plume_scaffold_4_prodigal-single.1__X__X__00095
Bact-Viramazon_plume_scaffold_4_prodigal-single.1__X__X__00095
Identity
- Kingdom:
- phage
Quality
73.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 38-81
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.63 | 49.0 | 4.44e-01 | 100.0% | 75.3% |
| 1sr9A02 | 3.30.160.270 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain | 0.62 | 52.0 | 3.59e-01 | 100.0% | 26.8% |
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.61 | 49.0 | 4.40e-01 | 100.0% | 75.0% |
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 3.79e-01 | 86.4% | 82.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3485763 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 40.0 | 3.39e-01 | 79.5% | 89.3% |
| 3941921 | 3317.1.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain | 0.54 | 43.0 | 4.18e-01 | 100.0% | 85.5% |
| 3602245 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.51 | 38.0 | 3.49e-01 | 88.6% | 76.9% |