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amazon_plume_scaffold_4_prodigal-single.1__X__X__00139

Bact-Vir

amazon_plume_scaffold_4_prodigal-single.1__X__X__00139

Identity

Kingdom:
phage

Quality

85.4 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-97
PDB
Domain cluster: rep: gwa1_scaffold_31_prodigal-single.1__X__X__00209__D2-89
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 33.0 3.96e-01 94.8% 86.2%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 4.55e-01 99.0% 84.0%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 33.0 3.55e-01 89.6% 69.0%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.55 48.0 3.79e-01 99.0% 56.3%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.10e-01 99.0% 80.9%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 47.0 4.28e-01 99.0% 96.9%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 46.0 4.49e-01 100.0% 90.4%
1i5pA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.50 43.0 3.45e-01 96.9% 81.8%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4973231 304.48.1.20 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1 0.64 36.0 2.70e-01 91.7% 21.7%
3629315 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 55.0 4.45e-01 100.0% 77.3%
3592269 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 4.58e-01 100.0% 95.6%
3693093 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 52.0 4.75e-01 100.0% 85.6%
3723092 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.57 51.0 4.78e-01 100.0% 89.2%
3559120 220.1.1.173 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK 0.57 51.0 4.75e-01 100.0% 94.2%
3540088 220.1.1.184 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.56 49.0 4.50e-01 100.0% 90.0%
5010503 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 37.0 3.76e-01 99.0% 68.4%
4940942 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 4.72e-01 100.0% 95.7%
3701275 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 48.0 4.26e-01 100.0% 89.3%
4030120 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 2.74e-01 100.0% 17.0%
3932851 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.53 47.0 4.35e-01 99.0% 90.0%
3224914 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.52 46.0 4.33e-01 99.0% 80.0%
3679362 4.1.1.351 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 0.52 40.0 4.24e-01 100.0% 92.9%
4927397 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 46.0 3.85e-01 100.0% 83.6%
3913071 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.51 46.0 4.08e-01 100.0% 80.0%