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amazon_plume_scaffold_4_prodigal-single.1__X__X__00194
Bact-Viramazon_plume_scaffold_4_prodigal-single.1__X__X__00194
Identity
- Kingdom:
- phage
Quality
49.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 310-431
Domain cluster:
rep: PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00220__D328-441
D2
medium
residues 1-185
D3
medium
residues 186-289
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qbyB01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.65 | 46.0 | 4.71e-01 | 82.7% | 76.5% |
| 1gq2A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 45.0 | 3.29e-01 | 74.0% | 92.0% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.61 | 38.0 | 4.05e-01 | 100.0% | 71.9% |
| 1jfaB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 54.0 | 3.70e-01 | 100.0% | 44.0% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 45.0 | 4.11e-01 | 84.6% | 75.0% |
| 4axzA00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.57 | 49.0 | 3.93e-01 | 98.1% | 76.1% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 44.0 | 4.38e-01 | 85.6% | 86.6% |
| 2ivxB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 43.0 | 4.24e-01 | 83.7% | 78.3% |
| 1vinA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 43.0 | 3.93e-01 | 86.5% | 89.9% |
| 4akgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.53 | 46.0 | 3.44e-01 | 97.1% | 79.0% |
| 4bemJ00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.53 | 40.0 | 3.40e-01 | 80.8% | 70.2% |
| 8h8jC01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 41.0 | 3.07e-01 | 87.5% | 57.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3988925 | 3227.1.1.1 ↗ | alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC | 0.73 | 55.0 | 3.66e-01 | 80.8% | 33.9% |
| 3620713 | 148.1.3.27 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_10 | 0.68 | 47.0 | 5.39e-01 | 74.0% | 100.0% |
| 3248344 | 1076.1.1.6 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › DUF2053 | 0.60 | 50.0 | 4.05e-01 | 90.4% | 100.0% |
| 3932277 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.58 | 46.0 | 3.53e-01 | 85.6% | 77.2% |
| 3403588 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.57 | 39.0 | 3.00e-01 | 71.2% | 83.8% |
| 2464258 | 3620.1.1.1 ↗ | alpha bundles › Factor H-binding protein BbCRASP-1 › Factor H-binding protein BbCRASP-1 › Factor H-binding protein BbCRASP-1 › PFam54_60 | 0.57 | 50.0 | 4.03e-01 | 99.0% | 78.9% |
| 3962218 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.57 | 37.0 | 3.73e-01 | 89.4% | 64.8% |
| 3931209 | 101.1.10.17 ↗ | alpha arrays › HTH › HTH › Cyclin-like › CycT2-like_C | 0.57 | 43.0 | 4.23e-01 | 81.7% | 84.3% |
| 4343029 | 3227.1.1.1 ↗ | alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC | 0.56 | 50.0 | 3.43e-01 | 100.0% | 39.2% |
| 1276701 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.56 | 44.0 | 4.15e-01 | 85.6% | 74.6% |
| 3493738 | 101.1.10.17 ↗ | alpha arrays › HTH › HTH › Cyclin-like › CycT2-like_C | 0.55 | 43.0 | 4.12e-01 | 83.7% | 73.3% |
| 3536460 | 109.3.1.139 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › RabGAP-TBC | 0.55 | 39.0 | 3.64e-01 | 74.0% | 71.5% |
| 4968261 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.54 | 42.0 | 4.01e-01 | 93.3% | 68.8% |
| 4927593 | 136.1.1.0 ↗ | alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases | 0.53 | 40.0 | 2.97e-01 | 93.3% | 31.5% |
| 3241203 | 544.1.1.0 ↗ | alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 | 0.51 | 40.0 | 3.85e-01 | 83.7% | 95.8% |
| 5007095 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.50 | 37.0 | 3.48e-01 | 95.2% | 62.3% |