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amazon_plume_scaffold_4_prodigal-single.1__X__X__00212
Bact-Viramazon_plume_scaffold_4_prodigal-single.1__X__X__00212
Identity
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-93
Domain cluster:
rep: LSDeep1_scaffold_42_prodigal-single.1__X__X__00003__D3-111
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2looA02 | 1.10.10.1740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like | 0.69 | 52.0 | 5.69e-01 | 97.8% | 97.3% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.63 | 40.0 | 4.04e-01 | 97.8% | 64.4% |
| 7tj9A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.60 | 35.0 | 3.35e-01 | 93.5% | 49.1% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.60 | 43.0 | 4.45e-01 | 75.0% | 85.1% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 32.0 | 3.77e-01 | 89.1% | 73.8% |
| 1d9cA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 37.0 | 3.43e-01 | 94.6% | 48.8% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 36.0 | 3.42e-01 | 97.8% | 51.3% |
| 2x8aA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 30.0 | 3.16e-01 | 76.1% | 56.2% |
| 6qv3A05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 47.0 | 4.75e-01 | 95.7% | 98.9% |
| 1pn9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 35.0 | 3.12e-01 | 97.8% | 43.8% |
| 5u4nA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 38.0 | 2.60e-01 | 71.7% | 50.6% |
| 4fwvA02 | 1.20.120.1680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 46.0 | 4.06e-01 | 92.4% | 94.8% |
| 3rjvA02 | 1.25.40.740 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 31.0 | 3.59e-01 | 88.0% | 79.7% |
| 4l0fA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.53 | 47.0 | 3.05e-01 | 100.0% | 33.9% |
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 33.0 | 3.23e-01 | 70.7% | 56.3% |
| 1f7uA02 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.52 | 35.0 | 3.21e-01 | 97.8% | 51.2% |
| 2xsbA02 | 1.20.58.240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 | 0.51 | 39.0 | 3.29e-01 | 79.3% | 55.7% |
| 2i10B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 44.0 | 4.01e-01 | 100.0% | 75.2% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3222373 | 605.4.1.18 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PF29357 | 0.66 | 34.0 | 3.59e-01 | 97.8% | 54.1% |
| 4075906 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.65 | 59.0 | 4.19e-01 | 100.0% | 78.9% |
| 3225673 | 5001.1.1.65 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Serpentine_r_xa | 0.63 | 44.0 | 3.05e-01 | 71.7% | 50.6% |
| 5027021 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.60 | 34.0 | 3.20e-01 | 85.9% | 44.3% |
| 4975638 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.59 | 49.0 | 3.87e-01 | 100.0% | 44.9% |
| 2576218 | 150.1.1.84 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › IMEF_Flp | 0.57 | 40.0 | 3.49e-01 | 73.9% | 92.9% |
| 5028176 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.56 | 40.0 | 2.88e-01 | 73.9% | 66.2% |
| 4554168 | 1079.1.1.13 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Mntp | 0.56 | 50.0 | 4.09e-01 | 100.0% | 80.0% |
| 5061943 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.55 | 49.0 | 4.43e-01 | 100.0% | 76.0% |
| 4020294 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.55 | 39.0 | 2.94e-01 | 100.0% | 30.9% |
| 4946795 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.55 | 40.0 | 3.99e-01 | 76.1% | 94.7% |
| 5040819 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.54 | 47.0 | 3.53e-01 | 100.0% | 46.0% |
| 3281450 | 5086.1.1.183 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › LysE | 0.54 | 47.0 | 4.29e-01 | 100.0% | 96.9% |
| 3233983 | 604.1.1.93 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TMD0_ABC | 0.54 | 37.0 | 2.91e-01 | 70.7% | 60.0% |
| 4995068 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.53 | 43.0 | 3.44e-01 | 88.0% | 94.2% |
| 4654652 | 633.21.1.23 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 | 0.53 | 39.0 | 3.39e-01 | 77.2% | 87.9% |
| 3222454 | 2002.1.1.150 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NAGidase | 0.53 | 36.0 | 2.29e-01 | 93.5% | 13.1% |
| 5023067 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.53 | 46.0 | 3.65e-01 | 97.8% | 48.2% |
| 3966460 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.53 | 40.0 | 2.91e-01 | 87.0% | 28.8% |
| 5062694 | 109.4.1.200 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14 | 0.52 | 33.0 | 2.98e-01 | 95.7% | 44.6% |
| 4801290 | 601.1.2.4 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_R4 | 0.52 | 37.0 | 3.21e-01 | 73.9% | 88.2% |
| 4973341 | 4271.1.1.3 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N | 0.52 | 46.0 | 3.59e-01 | 98.9% | 98.0% |
| 4675332 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.51 | 43.0 | 4.01e-01 | 98.9% | 72.5% |
| 3476314 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.51 | 36.0 | 3.24e-01 | 73.9% | 99.3% |
| 5006227 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.51 | 42.0 | 4.05e-01 | 98.9% | 78.2% |
| 5031388 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.51 | 37.0 | 3.48e-01 | 77.2% | 97.4% |
| 3959099 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.51 | 44.0 | 3.98e-01 | 100.0% | 70.8% |