←Back to structures

amazon_plume_scaffold_4_prodigal-single.1__X__X__00234

Bact-Vir

amazon_plume_scaffold_4_prodigal-single.1__X__X__00234

Identity

Kingdom:
phage

Quality

77.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-81
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.78 70.0 5.39e-01 97.5% 59.4%
3sh4A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.77 70.0 5.24e-01 100.0% 53.8%
3immA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.74 67.0 4.97e-01 98.8% 69.0%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.73 65.0 4.83e-01 97.5% 55.6%
3hbkA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.73 66.0 4.71e-01 100.0% 61.5%
2wjsA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.72 64.0 5.07e-01 97.5% 58.4%
4jqtA01 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.72 65.0 4.85e-01 100.0% 61.2%
1d2sA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.72 63.0 4.95e-01 97.5% 58.8%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.71 63.0 5.14e-01 98.8% 70.2%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.71 61.0 5.06e-01 95.1% 70.7%
5nslA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.71 64.0 4.78e-01 100.0% 58.7%
1ajoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 61.0 4.48e-01 96.3% 75.0%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 57.0 4.84e-01 92.6% 75.4%
1c1fA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 58.0 4.92e-01 96.3% 76.3%
6ixwB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 47.0 3.73e-01 72.8% 97.5%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 60.0 4.94e-01 100.0% 76.4%
5ljwB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 47.0 3.81e-01 80.2% 93.5%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.57 42.0 4.34e-01 76.5% 86.5%
4bg8A01 3.30.420.430 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 42.0 3.64e-01 77.8% 81.4%
3aqgB00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.55 43.0 3.68e-01 87.7% 95.7%
3h1qA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 43.0 3.59e-01 88.9% 83.0%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 2.84e-01 77.8% 68.8%
5twbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 40.0 2.92e-01 80.2% 72.9%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 48.0 3.67e-01 100.0% 87.4%
2q0lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 38.0 2.93e-01 77.8% 86.1%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 38.0 2.99e-01 77.8% 63.7%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 37.0 2.99e-01 77.8% 70.8%
2yg5A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 38.0 2.94e-01 79.0% 83.9%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.51e-01 97.5% 69.8%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3779878 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.78 72.0 5.68e-01 100.0% 56.2%
3585077 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.78 69.0 6.04e-01 97.5% 85.8%
1317200 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.77 63.0 4.57e-01 87.7% 38.2%
3702424 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.77 70.0 6.00e-01 100.0% 84.8%
3616765 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.76 67.0 4.98e-01 97.5% 64.9%
5030605 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.76 68.0 5.70e-01 100.0% 72.1%
3510204 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.74 67.0 4.23e-01 100.0% 30.0%
3765454 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.74 68.0 5.74e-01 100.0% 72.3%
3512771 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.74 65.0 5.05e-01 97.5% 51.4%
3701432 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.73 66.0 5.95e-01 100.0% 85.5%
3391671 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.72 65.0 5.21e-01 100.0% 71.0%
3509390 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.70 64.0 5.54e-01 100.0% 85.0%
3195740 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.69 62.0 4.33e-01 98.8% 35.3%
3995842 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.68 62.0 4.64e-01 100.0% 49.0%
4004205 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.68 60.0 5.25e-01 97.5% 65.0%
3488355 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.67 59.0 4.65e-01 97.5% 56.5%
3955375 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 49.0 3.98e-01 77.8% 93.5%
4934590 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.67 42.0 3.98e-01 84.0% 53.7%
3232992 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 57.0 4.65e-01 97.5% 55.3%
5068015 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.63 42.0 4.41e-01 84.0% 74.7%
4934194 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.63 46.0 3.50e-01 77.8% 89.0%
4851691 10.1.1.39 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › bCoV_S1_N 0.59 52.0 4.07e-01 97.5% 57.1%
3595869 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.59 42.0 4.03e-01 86.4% 64.2%
4408461 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.58 45.0 3.45e-01 82.7% 83.1%
3702784 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.58 42.0 3.98e-01 86.4% 63.0%
3958604 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.56 32.0 2.46e-01 79.0% 22.6%
5020059 218.4.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.55 39.0 3.65e-01 72.8% 77.0%
3543169 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.55 43.0 4.27e-01 86.4% 81.2%
5056053 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 40.0 3.52e-01 79.0% 56.8%
3514049 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 41.0 2.78e-01 81.5% 71.1%
3527360 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.54 40.0 3.02e-01 79.0% 63.6%
3540021 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.54 41.0 3.15e-01 82.7% 65.6%
1868485 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.54 42.0 3.48e-01 86.4% 94.1%
3879656 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.53 39.0 3.02e-01 79.0% 67.0%
3545459 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.53 39.0 2.90e-01 77.8% 62.5%
3780250 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.52 37.0 2.54e-01 74.1% 84.5%
3888075 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.52 40.0 3.02e-01 82.7% 64.6%
4886914 4998.1.1.1 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.52 35.0 2.94e-01 70.4% 69.2%
4945660 230.1.1.3 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.52 37.0 3.09e-01 76.5% 88.7%
3886244 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.51 39.0 2.99e-01 84.0% 63.0%
3765561 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.51 39.0 2.88e-01 84.0% 54.5%
4960002 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.88e-01 87.7% 94.4%
3912886 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.50 38.0 2.96e-01 80.2% 66.9%