Back to structures

ankyrin-like_protein

Euk-Vir

Yaba_monkey_tumor_virus

ankyrin-like_protein__NP_938397__Yaba_monkey_tumor_virus__38804

Identity

Accession:
NP_938397 ↗
Protein ID:
ankyrin-like_protein
Kingdom:
euk

Quality

84.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 254-350
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09372.16 best PRANC 91.9 3.70e-26 99.0% 95.9%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o7dC01 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.64 39.0 4.67e-01 85.6% 95.1%
4csrB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.59 38.0 4.15e-01 90.7% 78.0%
1w36F02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 33.0 3.27e-01 75.3% 53.0%
2oceA01 1.10.10.650 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like 0.57 51.0 4.86e-01 99.0% 96.5%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.56 39.0 4.05e-01 74.2% 75.8%
3vtfA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 44.0 3.51e-01 86.6% 98.6%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.56 39.0 3.65e-01 71.1% 73.3%
3ripA02 1.20.120.1900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain 0.54 47.0 3.47e-01 99.0% 77.1%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.52 43.0 4.13e-01 88.7% 82.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3909893 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.74 52.0 4.59e-01 73.2% 94.3%
3849731 5069.1.1.4 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct 0.63 45.0 3.38e-01 75.3% 86.0%
4241363 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.58 46.0 3.68e-01 83.5% 75.7%
3625473 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.57 45.0 3.15e-01 84.5% 40.6%
4304767 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.57 44.0 4.40e-01 81.4% 88.0%
3630574 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.55 40.0 4.12e-01 77.3% 77.9%
4403319 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.53 39.0 3.80e-01 77.3% 88.6%
D2 medium residues 1-116
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3deoA02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.74 68.0 6.29e-01 99.1% 91.1%
3t8kA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.73 67.0 5.71e-01 100.0% 88.6%
6if3A00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.72 66.0 5.89e-01 99.1% 74.8%
1s70B01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.70 65.0 5.73e-01 100.0% 72.8%
1ctnA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 51.0 3.63e-01 100.0% 52.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3578016 109.3.1.219 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_3, Ank_5 0.76 55.0 6.15e-01 74.1% 100.0%
3268304 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.69 60.0 5.64e-01 94.0% 87.1%
4015770 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.64 57.0 4.67e-01 100.0% 63.6%
3651370 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.62 51.0 5.33e-01 88.8% 97.1%
3459996 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 55.0 3.71e-01 100.0% 42.3%
3773998 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 51.0 3.77e-01 100.0% 41.0%
D3 medium residues 117-253
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13637.13 best Ank_4 39.1 9.60e-10 36.5% 94.0%