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ankyrin_repeat_domain

Euk-Vir

Pandoravirus_salinus

ankyrin_repeat_domain__YP_008438187__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008438187 ↗
Protein ID:
ankyrin_repeat_domain
Kingdom:
euk

Quality

88.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (103 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-80
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 31.4 1.70e-07 61.3% 93.6%
PF00646.39 F-box 21.5 2.30e-04 50.0% 83.7%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e31A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.78 49.0 5.54e-01 81.2% 82.3%
1vb5A01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.55 42.0 4.07e-01 83.7% 71.3%
3o4yA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 39.0 3.56e-01 81.2% 88.2%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.51 37.0 3.74e-01 80.0% 90.4%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3617100 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 49.0 5.47e-01 80.0% 66.2%
3339201 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 47.0 6.36e-01 80.0% 97.8%
3417160 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 52.0 4.89e-01 92.5% 54.7%
3807195 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 54.0 5.75e-01 98.8% 77.1%
3458366 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 45.0 5.83e-01 80.0% 100.0%
3643709 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 45.0 5.28e-01 80.0% 83.6%
4879175 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 49.0 5.52e-01 81.2% 81.2%
3991559 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 49.0 5.58e-01 83.7% 86.7%
3730054 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 48.0 5.19e-01 83.7% 74.3%
3545077 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 53.0 6.10e-01 78.8% 98.3%
3802856 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 46.0 5.46e-01 83.7% 92.7%
3761388 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 54.0 5.31e-01 76.2% 97.6%
3259075 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 52.0 5.29e-01 81.2% 75.6%
None — 0.72 54.0 3.42e-01 78.8% 26.1%
3448206 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 44.0 5.17e-01 96.2% 90.9%
3875490 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 49.0 4.73e-01 71.2% 100.0%
3309148 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 52.0 3.50e-01 78.8% 39.6%
3452785 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.69 53.0 3.68e-01 81.2% 41.2%
3854698 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 55.0 3.42e-01 83.7% 24.8%
3430952 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.68 51.0 3.10e-01 78.8% 26.5%
3370474 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 48.0 5.27e-01 100.0% 89.2%
4245088 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 52.0 5.39e-01 80.0% 90.7%
3544561 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 52.0 5.22e-01 80.0% 100.0%
3422989 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.67 51.0 3.07e-01 78.8% 25.1%
3579997 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.67 46.0 4.95e-01 71.2% 100.0%
3420676 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.67 51.0 3.44e-01 80.0% 37.8%
3303758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.67 49.0 2.78e-01 76.2% 11.5%
3261484 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.67 45.0 4.98e-01 80.0% 86.2%
3441758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.66 51.0 3.24e-01 81.2% 36.6%
3930695 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 48.0 4.95e-01 76.2% 100.0%
3920574 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.63 54.0 5.00e-01 92.5% 79.0%
3856479 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.63 48.0 2.98e-01 80.0% 18.5%
3840709 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 54.0 5.06e-01 92.5% 81.1%
3865783 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 58.0 3.35e-01 100.0% 97.5%
3542973 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.62 50.0 3.23e-01 87.5% 29.0%
3827758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.61 57.0 3.68e-01 100.0% 25.2%
3465759 207.1.1.99 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 0.61 56.0 3.84e-01 100.0% 33.6%
3537637 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.60 54.0 3.61e-01 96.2% 34.7%
3817998 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.60 56.0 3.83e-01 100.0% 32.2%
3825072 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.60 52.0 3.44e-01 92.5% 94.7%
3492973 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.60 56.0 3.55e-01 100.0% 30.0%
3274776 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.60 54.0 5.12e-01 98.8% 86.3%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.59 53.0 4.96e-01 98.8% 100.0%
3563353 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.59 41.0 4.23e-01 100.0% 77.3%
3655623 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.59 53.0 4.67e-01 97.5% 94.8%
3645526 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.59 54.0 3.73e-01 100.0% 42.6%
3204329 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.58 53.0 4.81e-01 98.8% 95.2%
3725732 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.58 50.0 5.02e-01 100.0% 93.8%
3276410 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.58 53.0 5.22e-01 100.0% 95.3%
3448066 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.58 53.0 5.00e-01 100.0% 86.3%
3319774 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.58 50.0 5.15e-01 100.0% 98.7%
3826138 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.57 53.0 3.25e-01 100.0% 29.4%
3425480 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.57 52.0 4.60e-01 100.0% 80.0%
3423552 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.57 52.0 3.80e-01 98.8% 58.5%
3233721 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.57 52.0 5.05e-01 100.0% 91.1%
3934848 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.57 43.0 4.55e-01 80.0% 95.7%
None — 0.57 52.0 3.29e-01 100.0% 22.8%
3350782 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.56 51.0 3.37e-01 100.0% 57.6%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.56 50.0 5.07e-01 97.5% 100.0%
3596116 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.55 50.0 4.80e-01 100.0% 100.0%
3887744 109.4.1.1206 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › F-box-like 0.55 49.0 3.45e-01 100.0% 32.3%
3403835 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.55 50.0 4.97e-01 100.0% 98.8%
D2 medium residues 247-341
PDB
Domain cluster: rep: Ankyrin_repeat_domain_containing_protein__YP_009480689__Pandoravirus_macleodensis__2107707__D456-515
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13637.13 best Ank_4 24.6 3.40e-05 45.3% 94.0%
D3 medium residues 342-395
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7xceA01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.76 65.0 4.27e-01 100.0% 28.7%
4bszB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.74 64.0 4.69e-01 100.0% 52.0%
5cecB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.74 63.0 4.38e-01 100.0% 34.7%
4qfvC02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.73 57.0 5.36e-01 85.2% 83.1%
3lvqE03 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 51.0 5.02e-01 83.3% 89.8%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.68 57.0 5.24e-01 100.0% 94.6%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.68 50.0 3.83e-01 85.2% 51.0%
1xeqB00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.61 41.0 3.61e-01 70.4% 80.0%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.01e-01 81.5% 82.6%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.57 40.0 3.63e-01 74.1% 75.3%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.56 43.0 3.19e-01 90.7% 34.3%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 38.0 2.86e-01 72.2% 70.7%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 40.0 3.32e-01 81.5% 84.5%
2pqrA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 39.0 3.51e-01 100.0% 73.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3273220 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.76 67.0 4.14e-01 100.0% 22.5%
3523343 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.76 66.0 4.41e-01 100.0% 30.5%
3381980 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 58.0 4.13e-01 100.0% 44.4%
3249826 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 57.0 4.28e-01 100.0% 42.1%
3664561 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.65 51.0 3.42e-01 88.9% 25.9%
3927480 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 4.19e-01 88.9% 80.0%
2501268 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.60 45.0 3.56e-01 85.2% 46.7%
3993980 4969.1.1.1 ↗ alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.59 49.0 3.43e-01 100.0% 94.0%
3211847 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.58 42.0 4.42e-01 77.8% 95.6%
3843832 173.1.1.1 ↗ alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like › Uteroglobin 0.58 42.0 3.83e-01 77.8% 57.5%
3647745 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.55 44.0 3.09e-01 100.0% 28.4%
3594721 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.52 37.0 3.27e-01 75.9% 82.4%
D4 medium residues 396-485
PDB
Domain cluster: rep: Ankyrin_repeat_domain_containing_protein__YP_009482714__Pandoravirus_quercus__2107709__D78-176