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aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00017

Bact-Vir

aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00017

Identity

Kingdom:
phage

Quality

87.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-59
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.77 65.0 4.92e-01 100.0% 39.1%
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.77 68.0 5.71e-01 100.0% 100.0%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.76 63.0 4.85e-01 98.1% 40.5%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.76 66.0 5.58e-01 100.0% 60.0%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 63.0 5.78e-01 98.1% 77.5%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 61.0 4.95e-01 98.1% 46.7%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 62.0 5.68e-01 96.2% 76.1%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 62.0 5.07e-01 96.2% 65.3%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.74 55.0 4.49e-01 82.7% 41.7%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.73 52.0 3.21e-01 78.8% 13.7%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.73 61.0 5.68e-01 100.0% 76.1%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.71 60.0 4.85e-01 100.0% 50.5%
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.71 58.0 4.88e-01 92.3% 78.9%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 55.0 5.10e-01 88.5% 75.0%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 56.0 5.16e-01 92.3% 73.9%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.69 59.0 4.76e-01 100.0% 100.0%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 56.0 4.51e-01 96.2% 50.0%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 56.0 5.15e-01 94.2% 73.2%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 50.0 3.01e-01 78.8% 21.6%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.68 56.0 4.83e-01 96.2% 58.0%
1e8cA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.68 56.0 3.66e-01 94.2% 21.4%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 54.0 4.63e-01 92.3% 57.3%
2qq6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.68 57.0 4.52e-01 100.0% 83.6%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.67 54.0 3.64e-01 96.2% 33.8%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 49.0 2.99e-01 78.8% 21.0%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 52.0 4.39e-01 92.3% 52.6%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.65 57.0 3.86e-01 98.1% 91.0%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.65 53.0 4.19e-01 92.3% 84.3%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.64 51.0 4.16e-01 94.2% 46.8%
4o89A02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.64 50.0 4.36e-01 96.2% 92.6%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 49.0 3.81e-01 96.2% 36.2%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 47.0 3.86e-01 82.7% 64.0%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 49.0 3.07e-01 86.5% 27.8%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 49.0 4.28e-01 100.0% 64.8%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 45.0 2.77e-01 82.7% 44.8%
1rfmA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.60 43.0 2.89e-01 76.9% 78.2%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.60 42.0 3.55e-01 75.0% 51.1%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.59 48.0 2.94e-01 92.3% 15.0%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 47.0 2.86e-01 92.3% 85.7%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 49.0 3.85e-01 98.1% 45.3%
1i99I02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 48.0 3.73e-01 94.2% 67.5%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 42.0 3.77e-01 80.8% 75.9%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 3.77e-01 100.0% 55.0%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 46.0 4.54e-01 98.1% 91.4%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 42.0 3.29e-01 80.8% 39.8%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 44.0 2.88e-01 90.4% 40.3%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 3.74e-01 96.2% 46.8%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 41.0 4.00e-01 92.3% 91.9%
3r2uB01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 44.0 2.96e-01 98.1% 50.0%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.55 44.0 3.90e-01 90.4% 60.3%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 44.0 3.34e-01 94.2% 90.4%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 43.0 3.80e-01 88.5% 60.8%
2zwrB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 43.0 2.97e-01 96.2% 23.7%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.50e-01 92.3% 50.0%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 42.0 3.63e-01 98.1% 97.8%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.51 37.0 2.80e-01 82.7% 49.7%
ECOD (98)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966382 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.87 73.0 6.76e-01 96.2% 73.8%
3585833 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.79 67.0 5.32e-01 98.1% 55.5%
3510389 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.78 66.0 5.60e-01 98.1% 58.4%
3515433 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.77 64.0 6.02e-01 94.2% 75.4%
3515207 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.77 65.0 5.53e-01 98.1% 61.1%
3503204 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.76 64.0 5.33e-01 98.1% 54.7%
3514659 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.76 62.0 5.02e-01 92.3% 52.0%
3619264 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.76 64.0 5.47e-01 100.0% 60.0%
3801624 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.75 63.0 5.18e-01 98.1% 56.0%
4043415 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.75 63.0 3.70e-01 98.1% 12.0%
5075279 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.75 63.0 4.92e-01 100.0% 43.5%
3492440 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.75 63.0 4.86e-01 98.1% 44.0%
3933100 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.75 58.0 5.31e-01 88.5% 64.3%
5810 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.75 63.0 5.20e-01 98.1% 55.6%
3481273 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.75 63.0 5.15e-01 100.0% 54.3%
3517888 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.75 64.0 5.43e-01 100.0% 62.2%
3780194 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.74 62.0 4.06e-01 98.1% 22.4%
4646999 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.74 62.0 5.46e-01 100.0% 71.1%
3710891 330.1.1.22 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.74 62.0 5.07e-01 96.2% 52.0%
3234330 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.74 63.0 4.98e-01 98.1% 54.5%
3933098 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.74 60.0 5.65e-01 98.1% 73.8%
3408937 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.73 60.0 5.33e-01 98.1% 62.5%
3730653 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.73 58.0 5.35e-01 90.4% 68.6%
3894031 330.1.1.6 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.73 61.0 5.25e-01 96.2% 58.8%
3700288 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.73 60.0 4.96e-01 92.3% 52.6%
3519033 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.73 60.0 5.29e-01 100.0% 65.9%
1564338 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.73 52.0 3.21e-01 78.8% 13.7%
3881061 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.72 56.0 5.29e-01 96.2% 70.8%
3408974 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.72 59.0 4.98e-01 96.2% 55.8%
5021439 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.72 56.0 5.00e-01 86.5% 62.7%
5023931 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 53.0 4.90e-01 84.6% 60.0%
3993443 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.72 60.0 5.41e-01 98.1% 72.0%
5000963 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.72 61.0 4.06e-01 100.0% 34.7%
3797651 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 58.0 4.89e-01 92.3% 58.9%
3510695 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 60.0 5.24e-01 98.1% 62.5%
4966228 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.71 60.0 5.43e-01 100.0% 94.7%
4064063 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.71 55.0 4.76e-01 86.5% 98.8%
3390564 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 57.0 4.64e-01 92.3% 48.6%
3517153 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.71 59.0 5.27e-01 100.0% 66.3%
3709800 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 58.0 4.84e-01 98.1% 51.6%
3771653 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.71 60.0 4.84e-01 98.1% 56.2%
3515884 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 48.0 3.67e-01 73.1% 30.8%
3519032 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 58.0 4.84e-01 98.1% 54.0%
4056032 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.70 58.0 3.84e-01 94.2% 22.7%
4283751 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 58.0 4.97e-01 98.1% 80.0%
5062226 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.70 59.0 4.04e-01 100.0% 45.5%
3329783 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.70 56.0 4.77e-01 96.2% 57.9%
3216768 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 57.0 4.67e-01 96.2% 48.6%
3408941 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.70 56.0 5.03e-01 96.2% 66.3%
5023140 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.70 56.0 3.95e-01 94.2% 39.4%
3403381 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.70 55.0 4.58e-01 92.3% 50.0%
3655368 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.70 57.0 5.19e-01 98.1% 72.0%
3508799 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 59.0 5.19e-01 100.0% 68.8%
3510700 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 57.0 4.81e-01 100.0% 63.0%
4567415 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 58.0 4.81e-01 100.0% 54.0%
3887511 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 58.0 4.80e-01 100.0% 54.0%
3403839 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 58.0 4.96e-01 100.0% 57.8%
3911301 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 54.0 4.75e-01 92.3% 61.2%
3505249 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 57.0 4.93e-01 100.0% 62.2%
3802643 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 57.0 4.80e-01 98.1% 55.8%
4600973 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 54.0 4.96e-01 90.4% 71.4%
3539602 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 56.0 4.61e-01 98.1% 68.6%
4394424 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 57.0 4.73e-01 100.0% 55.0%
4040354 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 56.0 5.04e-01 96.2% 70.7%
3789856 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 56.0 4.53e-01 100.0% 51.3%
4015773 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.67 50.0 4.11e-01 82.7% 85.0%
3317750 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 52.0 3.84e-01 88.5% 32.7%
3164102 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.67 50.0 5.27e-01 90.4% 100.0%
4949090 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.67 53.0 4.47e-01 92.3% 75.8%
4971337 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.67 54.0 4.70e-01 94.2% 81.2%
None 0.66 51.0 3.90e-01 90.4% 62.1%
4939731 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.66 56.0 5.29e-01 100.0% 83.1%
3514663 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.66 52.0 4.83e-01 98.1% 68.0%
3399510 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.65 45.0 4.04e-01 73.1% 53.3%
4027723 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.64 50.0 4.54e-01 84.6% 88.6%
3415735 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.64 49.0 4.15e-01 88.5% 90.5%
3923911 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.64 45.0 3.99e-01 75.0% 53.3%
5022340 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 46.0 4.24e-01 80.8% 58.6%
3167601 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.63 49.0 4.11e-01 88.5% 89.5%
3331262 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.62 49.0 4.15e-01 90.4% 94.7%
3446884 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.78e-01 100.0% 70.0%
4028791 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.62 50.0 4.98e-01 96.2% 94.5%
4570530 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.61 46.0 3.80e-01 84.6% 42.3%
4032095 6043.1.1.6 a+b two layers › yfeY-like › yfeY-like › yfeY-like › PF28288 0.59 45.0 4.01e-01 86.5% 57.3%
3768845 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.59 45.0 3.69e-01 86.5% 70.5%
3521669 220.1.1.155 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 0.58 49.0 3.86e-01 92.3% 81.9%
4995609 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 50.0 3.57e-01 94.2% 70.3%
3228776 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 41.0 2.62e-01 80.8% 23.4%
3584285 5.1.11.15 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DPPIV_N 0.56 40.0 2.42e-01 78.8% 9.5%
3169644 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.56 49.0 3.47e-01 100.0% 65.0%
3496244 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.43e-01 98.1% 35.7%
3476014 220.1.1.155 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 0.54 44.0 3.65e-01 92.3% 86.0%
3230359 207.1.1.66 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › DUF3557 0.53 38.0 2.46e-01 80.8% 14.6%
3249582 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.53 44.0 3.94e-01 100.0% 65.3%
3714703 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.52 46.0 3.65e-01 96.2% 51.0%
4932452 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 3.61e-01 100.0% 91.6%
1406320 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.52 42.0 3.68e-01 92.3% 90.2%
5053431 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.52 45.0 3.19e-01 96.2% 67.7%
D2 high residues 73-149
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p1aA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 42.0 3.76e-01 75.3% 98.2%
1twfA05 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.56 46.0 3.72e-01 92.2% 92.8%
3pm9A03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 46.0 3.98e-01 93.5% 77.7%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 37.0 3.32e-01 70.1% 99.1%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.37e-01 71.4% 91.7%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 44.0 4.20e-01 92.2% 78.7%
1kn6A00 3.30.70.850 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8, pro-domain 0.53 43.0 4.38e-01 94.8% 93.2%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 36.0 3.32e-01 71.4% 100.0%
2fckA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 38.0 2.99e-01 76.6% 74.6%
1dl5A02 3.55.20.10 Alpha Beta › 3-Layer(bab) Sandwich › Protein-l-isoaspartate O-methyltransferase; Chain: A, domain 2 › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain 0.53 40.0 3.56e-01 84.4% 55.2%
3upsA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 41.0 3.67e-01 84.4% 63.9%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 3.88e-01 97.4% 78.8%
2rb7A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 43.0 3.93e-01 94.8% 93.5%
4c3xA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 2.90e-01 97.4% 86.5%
3gqwB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 43.0 2.76e-01 98.7% 56.5%
4pcqA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.51 40.0 3.95e-01 94.8% 81.0%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 43.0 4.02e-01 96.1% 76.2%
1pwkA00 3.30.740.10 Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 0.51 36.0 3.49e-01 76.6% 94.5%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.51 39.0 3.36e-01 85.7% 96.3%
4dmzA02 3.30.70.2880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.29e-01 84.4% 51.1%
2hfvA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.51 42.0 4.25e-01 93.5% 94.8%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.50 33.0 3.52e-01 93.5% 80.0%
3e7wA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.50 43.0 2.79e-01 100.0% 59.4%
5suhB01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.50 42.0 3.97e-01 100.0% 94.9%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 38.0 3.13e-01 83.1% 54.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000280 5103.1.1.0 a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 0.70 58.0 5.36e-01 92.2% 78.0%
4678264 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.59 49.0 4.92e-01 92.2% 91.3%
4998264 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.59 49.0 4.75e-01 90.9% 92.9%
4208861 2004.1.1.224 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA 0.58 43.0 3.05e-01 79.2% 35.9%
3784871 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.58 48.0 4.62e-01 96.1% 90.0%
3232913 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.57 47.0 3.62e-01 93.5% 57.8%
3242883 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.56 38.0 2.53e-01 70.1% 69.1%
3972267 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 39.0 2.58e-01 74.0% 100.0%
3263502 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.54 43.0 4.12e-01 87.0% 93.3%
3977907 223.1.1.57 a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif 0.54 43.0 3.05e-01 87.0% 68.4%
4446499 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.54 45.0 4.46e-01 93.5% 88.7%
3900771 330.9.1.0 a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.53 31.0 3.39e-01 83.1% 71.7%
4080030 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.53 43.0 4.34e-01 92.2% 92.0%
3175626 331.1.1.13 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.53 38.0 3.86e-01 75.3% 96.0%
4478959 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.53 41.0 4.22e-01 87.0% 92.0%
3977017 223.1.1.57 a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif 0.53 42.0 3.06e-01 87.0% 76.9%
6346 331.8.1.1 a+b two layers › TBP-like › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain › PIMT_C 0.53 40.0 3.69e-01 84.4% 61.5%
3590812 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 37.0 4.09e-01 74.0% 100.0%
4659650 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 42.0 4.07e-01 93.5% 93.3%
4927492 304.51.1.11 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_N 0.50 40.0 3.85e-01 92.2% 96.8%