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aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00026
Bact-Viraot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00026
Identity
- Kingdom:
- phage
Quality
71.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-71_135-162
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5wl1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 34.0 | 3.47e-01 | 85.9% | 51.5% |
| 1lshA03 | 2.20.50.20 | Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 | 0.62 | 35.0 | 3.53e-01 | 71.7% | 55.1% |
| 1jz7A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 35.0 | 3.35e-01 | 85.9% | 47.8% |
| 2qm0A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 52.0 | 3.88e-01 | 99.0% | 61.6% |
| 4dkkA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 31.0 | 3.53e-01 | 75.8% | 68.9% |
| 2vzsA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 35.0 | 3.57e-01 | 89.9% | 60.4% |
| 4fpwB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 41.0 | 3.51e-01 | 100.0% | 47.2% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.56 | 51.0 | 4.56e-01 | 100.0% | 88.2% |
| 3c8dB02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 50.0 | 3.72e-01 | 100.0% | 53.0% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 30.0 | 3.37e-01 | 71.7% | 70.3% |
| 3gffA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 47.0 | 3.33e-01 | 99.0% | 48.7% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 38.0 | 3.48e-01 | 89.9% | 55.1% |
| 2vdrB02 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.53 | 37.0 | 3.24e-01 | 97.0% | 47.1% |
| 4f0jA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 47.0 | 3.34e-01 | 100.0% | 70.5% |
| 2k4nA00 | 3.30.720.70 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.51 | 34.0 | 3.29e-01 | 79.8% | 59.5% |
| 3qfgA00 | 2.60.40.1240 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 40.0 | 3.58e-01 | 98.0% | 59.3% |
| 2z5bB01 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.50 | 41.0 | 3.93e-01 | 89.9% | 100.0% |
| 2v8pA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.50 | 45.0 | 3.89e-01 | 100.0% | 83.9% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2374 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.66 | 35.0 | 4.11e-01 | 71.7% | 73.5% |
| 2438911 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 36.0 | 3.46e-01 | 90.9% | 49.1% |
| 3733818 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.61 | 38.0 | 2.78e-01 | 71.7% | 22.9% |
| 5046300 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.60 | 41.0 | 4.37e-01 | 93.9% | 81.2% |
| 3196947 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 40.0 | 2.49e-01 | 100.0% | 11.5% |
| 3817782 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.57 | 38.0 | 3.39e-01 | 100.0% | 48.6% |
| 3939950 | 11.1.1.532 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 | 0.56 | 35.0 | 3.92e-01 | 70.7% | 78.8% |
| 4136159 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.56 | 39.0 | 3.22e-01 | 71.7% | 44.0% |
| 3933721 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.56 | 46.0 | 3.92e-01 | 100.0% | 54.5% |
| 3356242 | 243.3.1.45 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › TIN1 | 0.56 | 40.0 | 4.03e-01 | 94.9% | 75.0% |
| 4624849 | 243.1.1.5 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Tim44 | 0.55 | 42.0 | 3.07e-01 | 94.9% | 29.9% |
| 4016906 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 43.0 | 3.18e-01 | 91.9% | 33.9% |
| 3713462 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.54 | 45.0 | 3.68e-01 | 100.0% | 48.6% |
| 4243367 | 3561.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 | 0.54 | 37.0 | 2.42e-01 | 71.7% | 19.5% |
| 3601572 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.54 | 46.0 | 3.29e-01 | 92.9% | 47.9% |
| 4306716 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.53 | 47.0 | 3.19e-01 | 100.0% | 44.9% |
| 3686408 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 48.0 | 3.59e-01 | 100.0% | 62.9% |
| 3694872 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 48.0 | 3.11e-01 | 98.0% | 35.6% |
| 3463561 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.53 | 45.0 | 3.01e-01 | 92.9% | 43.4% |
| 3590896 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 39.0 | 2.65e-01 | 76.8% | 36.2% |
| 3471080 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 32.0 | 3.45e-01 | 90.9% | 70.6% |
| 3515333 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 33.0 | 3.46e-01 | 96.0% | 68.9% |
| 3738196 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.52 | 45.0 | 3.08e-01 | 99.0% | 52.4% |
| 3634674 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.52 | 38.0 | 2.62e-01 | 76.8% | 87.9% |
| 5008723 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.52 | 33.0 | 2.79e-01 | 100.0% | 36.0% |
| 3238632 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.52 | 35.0 | 3.73e-01 | 71.7% | 77.8% |
| 3923184 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.51 | 45.0 | 3.04e-01 | 99.0% | 44.1% |
| 4982907 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.51 | 43.0 | 4.34e-01 | 90.9% | 91.0% |
| 5078865 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.50 | 38.0 | 3.46e-01 | 100.0% | 59.3% |
| 3460207 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.50 | 44.0 | 3.24e-01 | 98.0% | 37.8% |
| 3263832 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.50 | 36.0 | 3.54e-01 | 74.7% | 91.4% |
D2
medium
residues 72-134_163-217
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iwcB00 | 3.30.360.110 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase domain | 0.56 | 26.0 | 3.46e-01 | 88.1% | 82.0% |
| 4kvxA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 42.0 | 3.90e-01 | 100.0% | 63.2% |
| 2g9wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 26.0 | 3.32e-01 | 98.3% | 79.1% |
| 4q8gA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 42.0 | 3.10e-01 | 90.7% | 76.5% |
| 4oi3A00 | 3.30.70.3090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer | 0.50 | 26.0 | 3.04e-01 | 75.4% | 69.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3498911 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.62 | 32.0 | 3.49e-01 | 81.4% | 59.2% |
| 4922787 | 4956.1.1.2 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_7 | 0.59 | 22.0 | 2.76e-01 | 84.7% | 52.9% |
| 4939906 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 28.0 | 3.36e-01 | 76.3% | 72.0% |
| 3692705 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.55 | 28.0 | 3.62e-01 | 99.2% | 86.2% |
| 3965259 | 243.3.1.16 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY_2 | 0.52 | 25.0 | 3.10e-01 | 100.0% | 73.0% |
| 3831199 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 31.0 | 3.22e-01 | 100.0% | 65.7% |
| 3792911 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.51 | 32.0 | 3.28e-01 | 100.0% | 63.5% |