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aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00056

Bact-Vir

aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00056

Identity

Kingdom:
phage

Quality

68.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 110-187
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 5.57e-01 100.0% 90.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.72 54.0 5.78e-01 100.0% 92.5%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 49.0 5.44e-01 100.0% 96.7%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 52.0 5.26e-01 100.0% 80.5%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 43.0 5.07e-01 94.9% 98.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 4.87e-01 98.7% 79.4%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 43.0 4.67e-01 92.3% 76.9%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 5.04e-01 100.0% 86.4%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 5.18e-01 100.0% 91.9%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.67 42.0 3.75e-01 98.7% 43.4%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 5.05e-01 97.4% 94.7%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 46.0 4.00e-01 100.0% 45.6%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.67 54.0 5.48e-01 100.0% 90.8%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 45.0 4.81e-01 76.9% 80.9%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 4.97e-01 100.0% 93.2%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 46.0 4.75e-01 74.4% 87.8%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 42.0 4.52e-01 97.4% 78.1%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.21e-01 98.7% 58.3%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.81e-01 97.4% 88.9%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.68e-01 93.6% 87.1%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 39.0 4.63e-01 74.4% 98.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.60e-01 98.7% 81.8%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 4.52e-01 87.2% 69.8%
2btwA00 3.90.70.30 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Phytochelatin synthase, N-terminal domain 0.64 56.0 4.14e-01 100.0% 40.5%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.72e-01 98.7% 75.9%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 48.0 4.82e-01 98.7% 79.0%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 51.0 5.16e-01 100.0% 90.8%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.63 49.0 4.63e-01 100.0% 69.5%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 52.0 5.09e-01 100.0% 85.7%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 42.0 4.71e-01 75.6% 94.7%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 51.0 5.05e-01 100.0% 85.5%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 44.0 3.71e-01 98.7% 44.3%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 44.0 4.92e-01 76.9% 98.3%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 44.0 3.79e-01 98.7% 47.2%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.61 37.0 4.37e-01 97.4% 92.2%
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.61 50.0 4.87e-01 100.0% 82.6%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 44.0 4.74e-01 75.6% 96.8%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 43.0 4.54e-01 78.2% 84.3%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.60 48.0 3.55e-01 100.0% 32.4%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.59e-01 74.4% 96.5%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 44.0 4.52e-01 80.8% 88.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.66e-01 98.7% 91.7%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 40.0 4.31e-01 74.4% 98.5%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 38.0 4.23e-01 92.3% 96.5%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 40.0 4.25e-01 76.9% 91.0%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 39.0 3.62e-01 100.0% 57.1%
3tfmA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.97e-01 89.7% 72.5%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.53 40.0 3.85e-01 82.1% 97.8%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 42.0 3.72e-01 100.0% 58.1%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 45.0 3.80e-01 100.0% 57.5%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 4.38e-01 100.0% 92.5%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.51 45.0 4.12e-01 100.0% 75.5%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.51 33.0 3.35e-01 91.0% 66.2%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 42.0 3.63e-01 93.6% 62.9%
ECOD (87)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 44.0 5.48e-01 89.7% 100.0%
4169657 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.73 44.0 5.23e-01 97.4% 94.0%
4668201 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.73 46.0 5.43e-01 100.0% 100.0%
4208040 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 54.0 5.55e-01 100.0% 83.6%
3510526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 48.0 5.50e-01 98.7% 98.2%
3305577 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.72 46.0 5.28e-01 100.0% 92.7%
3675341 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.70 44.0 5.08e-01 100.0% 90.9%
5017214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 44.0 5.01e-01 98.7% 89.1%
4534931 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.70 43.0 4.39e-01 98.7% 64.0%
4432330 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.70 44.0 5.16e-01 100.0% 98.0%
3436022 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.69 44.0 5.01e-01 100.0% 90.9%
3519125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 43.0 4.99e-01 93.6% 98.0%
4010317 4.1.1.395 ↗ beta barrels › SH3 › SH3 › SH3 › PF27398 0.68 43.0 4.63e-01 100.0% 76.9%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.67 49.0 5.45e-01 98.7% 98.3%
1678740 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 54.0 5.46e-01 100.0% 88.5%
3476478 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 42.0 4.01e-01 97.4% 52.6%
5072949 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 50.0 5.40e-01 100.0% 98.5%
2499682 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 54.0 5.41e-01 100.0% 88.5%
3617355 4.1.1.348 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor, SMN_YG-box 0.66 45.0 4.24e-01 98.7% 57.9%
3525406 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.66 44.0 3.97e-01 97.4% 49.1%
4930563 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 51.0 5.33e-01 100.0% 94.3%
3344796 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 47.0 4.65e-01 98.7% 71.1%
3926175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.59e-01 100.0% 69.4%
3490689 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 49.0 5.09e-01 98.7% 88.6%
5011500 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.65 50.0 4.66e-01 100.0% 65.0%
4030943 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 53.0 5.33e-01 100.0% 89.9%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 50.0 5.11e-01 100.0% 86.7%
5042892 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.65 46.0 5.03e-01 100.0% 96.7%
3779830 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.65 46.0 4.43e-01 100.0% 65.6%
5067227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 49.0 4.86e-01 100.0% 77.1%
3979986 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 53.0 5.41e-01 100.0% 94.7%
3589954 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 53.0 5.41e-01 100.0% 94.7%
5033892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 5.12e-01 100.0% 95.4%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.64 50.0 5.11e-01 100.0% 88.0%
3599257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 5.02e-01 97.4% 93.8%
5042313 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 51.0 5.23e-01 100.0% 92.0%
3753231 4.1.1.226 ↗ beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.64 48.0 4.81e-01 100.0% 78.8%
5055435 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 52.0 5.40e-01 100.0% 100.0%
4941299 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.64 48.0 4.66e-01 98.7% 72.9%
4020558 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.84e-01 78.2% 89.2%
3997949 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 44.0 4.25e-01 100.0% 63.3%
3672445 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 3.77e-01 100.0% 41.4%
4598590 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.63 45.0 4.77e-01 98.7% 84.3%
5040422 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 52.0 5.34e-01 100.0% 96.0%
4927532 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.63 52.0 4.47e-01 98.7% 56.8%
3172078 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 54.0 3.90e-01 100.0% 32.1%
4952214 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 51.0 5.26e-01 100.0% 94.7%
3386779 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 51.0 5.26e-01 100.0% 95.9%
3692073 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 45.0 4.76e-01 80.8% 85.7%
3523046 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 45.0 4.39e-01 82.1% 69.4%
3623786 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 45.0 4.80e-01 82.1% 90.8%
3615365 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 54.0 3.95e-01 100.0% 38.7%
3399557 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 5.11e-01 100.0% 95.7%
4952478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 51.0 5.18e-01 100.0% 94.7%
3998645 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 45.0 4.82e-01 87.2% 92.3%
5030535 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 51.0 5.17e-01 100.0% 94.7%
4984041 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 51.0 5.22e-01 100.0% 96.0%
3903323 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 44.0 4.56e-01 82.1% 78.7%
3622911 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 48.0 5.05e-01 98.7% 95.7%
4947702 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 5.21e-01 100.0% 96.0%
5072519 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 51.0 5.18e-01 100.0% 96.0%
3485667 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.62 51.0 5.22e-01 96.2% 96.0%
3278853 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.60e-01 100.0% 90.8%
3437523 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.61 45.0 4.71e-01 98.7% 85.7%
3275615 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 45.0 3.83e-01 98.7% 47.3%
3170688 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.61 43.0 4.79e-01 98.7% 96.7%
5049033 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.61 50.0 5.09e-01 100.0% 94.7%
5027286 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.61 50.0 4.89e-01 100.0% 83.5%
4033110 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.61 51.0 5.22e-01 100.0% 98.7%
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 3.83e-01 98.7% 48.8%
4984135 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.60 50.0 4.93e-01 100.0% 85.7%
3672735 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.60 43.0 4.65e-01 98.7% 90.8%
3176702 219.1.1.115 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.60 53.0 4.24e-01 100.0% 53.5%
3539094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.45e-01 80.8% 83.7%
3339169 4.1.1.415 ↗ beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.59 50.0 4.89e-01 100.0% 84.7%
3398023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 3.85e-01 100.0% 41.7%
3763060 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 44.0 4.64e-01 84.6% 92.9%
2726588 4.1.1.317 ↗ beta barrels › SH3 › SH3 › SH3 › Fe_dep_repress 0.58 50.0 4.79e-01 100.0% 84.6%
3843359 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.57 47.0 4.58e-01 100.0% 83.5%
3515762 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.57 43.0 4.43e-01 98.7% 85.3%
3503000 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.82e-01 96.2% 94.1%
3618259 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.12e-01 100.0% 66.7%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.55 45.0 3.54e-01 92.3% 50.9%
3315510 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.54 47.0 4.27e-01 100.0% 82.7%
3363751 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.54 48.0 4.34e-01 100.0% 86.7%
3274701 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.53 36.0 3.95e-01 94.9% 93.3%
3678872 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.52 43.0 4.39e-01 100.0% 94.7%
D2 medium residues 28-105
PDB