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aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00063
Bact-Viraot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00063
Identity
- Kingdom:
- phage
Quality
82.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-62
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zkmX01 | 2.30.29.240 | Mainly Beta › Roll › PH-domain like › | 0.66 | 52.0 | 3.57e-01 | 90.7% | 49.5% |
| 2rqtA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 51.0 | 4.93e-01 | 85.2% | 95.1% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.65 | 50.0 | 4.06e-01 | 96.3% | 42.5% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.64 | 57.0 | 5.09e-01 | 100.0% | 71.4% |
| 2e6nA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 54.0 | 4.37e-01 | 96.3% | 49.0% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 57.0 | 5.26e-01 | 100.0% | 92.9% |
| 1ljoA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 55.0 | 5.00e-01 | 100.0% | 90.7% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 53.0 | 5.34e-01 | 90.7% | 92.5% |
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 57.0 | 5.15e-01 | 100.0% | 74.0% |
| 1vwxM01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 55.0 | 4.72e-01 | 96.3% | 61.2% |
| 2ct4A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 50.0 | 4.64e-01 | 87.0% | 82.9% |
| 4b6mB00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.63 | 55.0 | 4.81e-01 | 96.3% | 91.1% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 48.0 | 5.01e-01 | 88.9% | 95.7% |
| 3b79A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.62 | 53.0 | 4.13e-01 | 100.0% | 48.0% |
| 1txqA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.62 | 53.0 | 4.83e-01 | 96.3% | 95.9% |
| 3mazA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 43.0 | 3.60e-01 | 74.1% | 57.6% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 53.0 | 5.00e-01 | 100.0% | 97.1% |
| 3h6zA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 53.0 | 4.27e-01 | 100.0% | 56.2% |
| 2l5qA01 | 2.30.30.730 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 46.0 | 4.78e-01 | 88.9% | 90.0% |
| 2ekhA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 48.0 | 4.24e-01 | 87.0% | 70.0% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 48.0 | 4.46e-01 | 87.0% | 82.4% |
| 2dk3A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 52.0 | 4.54e-01 | 100.0% | 75.6% |
| 2rrfA00 | 2.30.29.160 | Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal | 0.61 | 47.0 | 3.64e-01 | 92.6% | 63.1% |
| 2awnC02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.60 | 40.0 | 3.60e-01 | 70.4% | 75.6% |
| 1zuyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 45.0 | 4.45e-01 | 83.3% | 98.3% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 48.0 | 4.26e-01 | 100.0% | 72.5% |
| 2epdA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 46.0 | 4.15e-01 | 87.0% | 75.0% |
| 2zxdA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 41.0 | 3.53e-01 | 75.9% | 95.6% |
| 1ssfA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 47.0 | 4.73e-01 | 92.6% | 94.5% |
| 6uzjA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 48.0 | 4.66e-01 | 98.1% | 96.8% |
| 3mcaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 49.0 | 3.87e-01 | 100.0% | 53.4% |
| 3n6rA03 | 3.30.700.30 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.57 | 46.0 | 3.65e-01 | 100.0% | 78.2% |
| 3p26B02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 49.0 | 4.04e-01 | 100.0% | 64.4% |
| 4ac9C04 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.56 | 48.0 | 4.31e-01 | 100.0% | 68.8% |
| 8b6zA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 48.0 | 4.22e-01 | 100.0% | 75.6% |
| 2bm0A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 49.0 | 3.97e-01 | 100.0% | 60.2% |
| 1zunB02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 47.0 | 4.05e-01 | 100.0% | 66.7% |
| 1twfI01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 38.0 | 4.05e-01 | 81.5% | 84.8% |
| 1r5bA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 48.0 | 4.13e-01 | 100.0% | 70.8% |
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 42.0 | 3.75e-01 | 96.3% | 57.5% |
| 2yweA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 48.0 | 3.95e-01 | 100.0% | 66.0% |
| 1irxA02 | 2.30.30.300 | Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like | 0.55 | 40.0 | 4.27e-01 | 87.0% | 100.0% |
| 2psbA00 | 3.50.90.10 | Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like | 0.53 | 45.0 | 2.91e-01 | 100.0% | 82.8% |
| 1ei5A03 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 42.0 | 3.63e-01 | 98.1% | 94.1% |
| 6su1D01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.53 | 43.0 | 3.74e-01 | 98.1% | 56.7% |
| 5h7jA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 45.0 | 3.66e-01 | 98.1% | 57.4% |
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.52 | 44.0 | 3.85e-01 | 100.0% | 65.5% |
| 1khiA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 35.0 | 3.30e-01 | 74.1% | 95.8% |
| 2bjfA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.52 | 42.0 | 2.70e-01 | 98.1% | 86.2% |
| 2o6yA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.50 | 38.0 | 2.67e-01 | 85.2% | 43.1% |
ECOD (74)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4583465 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.71 | 59.0 | 6.08e-01 | 100.0% | 98.0% |
| 4627221 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.71 | 57.0 | 5.34e-01 | 96.3% | 72.3% |
| 4665407 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.71 | 55.0 | 5.73e-01 | 96.3% | 92.0% |
| 4680376 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.70 | 56.0 | 5.62e-01 | 98.1% | 85.5% |
| 3621818 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.70 | 59.0 | 6.09e-01 | 92.6% | 98.0% |
| 3347851 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.70 | 58.0 | 5.31e-01 | 96.3% | 70.0% |
| 3264806 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 58.0 | 5.97e-01 | 96.3% | 98.0% |
| 3926623 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.70 | 61.0 | 5.49e-01 | 96.3% | 83.6% |
| 3993250 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.70 | 60.0 | 5.99e-01 | 98.1% | 92.7% |
| 4516378 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.69 | 55.0 | 5.05e-01 | 98.1% | 67.1% |
| 3304602 | 4.1.1.427 ↗ | beta barrels › SH3 › SH3 › SH3 › F-box | 0.69 | 58.0 | 4.79e-01 | 98.1% | 52.6% |
| 1263713 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.68 | 58.0 | 5.91e-01 | 96.3% | 96.2% |
| 3275832 | 4.1.1.104 ↗ | beta barrels › SH3 › SH3 › SH3 › KN17_SH3 | 0.68 | 58.0 | 5.82e-01 | 94.4% | 100.0% |
| 2525277 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.68 | 60.0 | 5.85e-01 | 100.0% | 89.8% |
| 3990857 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 60.0 | 5.87e-01 | 100.0% | 93.3% |
| 2426920 | 4.1.1.31 ↗ | beta barrels › SH3 › SH3 › SH3 › Spin-Ssty | 0.67 | 54.0 | 5.42e-01 | 90.7% | 96.4% |
| 3326132 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 55.0 | 5.21e-01 | 96.3% | 75.4% |
| 3555931 | 4.1.1.322 ↗ | beta barrels › SH3 › SH3 › SH3 › GPKOW_C | 0.67 | 59.0 | 4.60e-01 | 98.1% | 49.6% |
| 3614414 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 56.0 | 5.53e-01 | 96.3% | 86.2% |
| 3774821 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 59.0 | 5.72e-01 | 98.1% | 95.0% |
| 3885050 | 4.1.1.360 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 | 0.67 | 59.0 | 4.06e-01 | 98.1% | 32.6% |
| 5071733 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.67 | 52.0 | 4.44e-01 | 87.0% | 71.1% |
| 3256431 | 4.1.1.360 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 | 0.66 | 55.0 | 4.79e-01 | 94.4% | 61.3% |
| 1032191 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.66 | 56.0 | 4.93e-01 | 96.3% | 64.9% |
| 4024913 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 54.0 | 5.12e-01 | 100.0% | 76.9% |
| 3639629 | 4.1.1.312 ↗ | beta barrels › SH3 › SH3 › SH3 › Med13_N | 0.66 | 59.0 | 4.14e-01 | 100.0% | 61.2% |
| 3222147 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 58.0 | 5.67e-01 | 100.0% | 96.7% |
| 3465976 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 55.0 | 5.24e-01 | 98.1% | 78.5% |
| 4009688 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.66 | 53.0 | 5.03e-01 | 100.0% | 75.4% |
| 3652661 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.65 | 58.0 | 4.36e-01 | 100.0% | 93.1% |
| 3397846 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 56.0 | 5.57e-01 | 100.0% | 92.7% |
| 4963446 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 54.0 | 5.21e-01 | 100.0% | 92.3% |
| 3999508 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 56.0 | 5.17e-01 | 96.3% | 91.4% |
| 3989485 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.65 | 52.0 | 5.36e-01 | 88.9% | 98.0% |
| 3329819 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.65 | 57.0 | 4.29e-01 | 100.0% | 90.4% |
| 4269858 | 4.1.1.312 ↗ | beta barrels › SH3 › SH3 › SH3 › Med13_N | 0.65 | 58.0 | 4.69e-01 | 100.0% | 96.0% |
| 3868320 | 4.1.1.65 ↗ | beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor | 0.65 | 54.0 | 5.14e-01 | 96.3% | 78.5% |
| 3573262 | 4.1.1.91 ↗ | beta barrels › SH3 › SH3 › SH3 › hSH3 | 0.64 | 51.0 | 4.32e-01 | 87.0% | 64.4% |
| 3308604 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.64 | 53.0 | 4.91e-01 | 100.0% | 78.7% |
| 3510676 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 56.0 | 4.66e-01 | 98.1% | 55.8% |
| 3460634 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.63 | 54.0 | 4.07e-01 | 100.0% | 80.0% |
| 4405852 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 56.0 | 4.84e-01 | 100.0% | 91.8% |
| 3810217 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 52.0 | 5.34e-01 | 90.7% | 100.0% |
| 3918340 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.63 | 48.0 | 4.43e-01 | 83.3% | 81.4% |
| 5022448 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 55.0 | 4.97e-01 | 100.0% | 94.7% |
| 4165723 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.62 | 50.0 | 4.79e-01 | 100.0% | 80.0% |
| 3592077 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 52.0 | 3.93e-01 | 100.0% | 95.2% |
| 3713588 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 52.0 | 4.43e-01 | 100.0% | 93.7% |
| 3911065 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 53.0 | 4.69e-01 | 98.1% | 80.0% |
| 3844858 | 220.1.1.39 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ZFYVE21_C | 0.61 | 48.0 | 3.62e-01 | 92.6% | 58.4% |
| 4957377 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.61 | 47.0 | 4.55e-01 | 90.7% | 74.6% |
| 5038405 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 46.0 | 4.83e-01 | 92.6% | 100.0% |
| 3241663 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.61 | 53.0 | 4.21e-01 | 100.0% | 93.9% |
| 3263031 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 53.0 | 5.05e-01 | 100.0% | 89.2% |
| 3691410 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 54.0 | 4.06e-01 | 100.0% | 90.0% |
| 3267345 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.61 | 49.0 | 4.89e-01 | 88.9% | 87.3% |
| 2561577 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.60 | 51.0 | 4.97e-01 | 98.1% | 90.2% |
| 4027625 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 47.0 | 4.90e-01 | 88.9% | 96.0% |
| 3415237 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 47.0 | 3.15e-01 | 85.2% | 38.6% |
| 3266053 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.60 | 53.0 | 4.12e-01 | 100.0% | 98.3% |
| 3544925 | 4.1.1.50 ↗ | beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 | 0.59 | 51.0 | 4.15e-01 | 100.0% | 61.8% |
| 4258307 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.59 | 48.0 | 3.18e-01 | 100.0% | 31.4% |
| 4610912 | 375.1.1.32 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ADK_lid | 0.57 | 39.0 | 4.32e-01 | 87.0% | 95.0% |
| 1124180 | 3794.1.1.1 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT | 0.57 | 46.0 | 3.64e-01 | 100.0% | 77.0% |
| 4025536 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 50.0 | 4.07e-01 | 100.0% | 63.0% |
| 4948259 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.56 | 49.0 | 3.04e-01 | 100.0% | 19.2% |
| 1489659 | 375.1.1.17 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1f | 0.56 | 42.0 | 4.43e-01 | 88.9% | 95.8% |
| 4278212 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.56 | 48.0 | 3.69e-01 | 100.0% | 47.7% |
| 5041229 | 375.13.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain | 0.55 | 40.0 | 3.92e-01 | 81.5% | 98.3% |
| 4027927 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.55 | 48.0 | 4.02e-01 | 100.0% | 67.4% |
| 4028185 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.54 | 37.0 | 3.84e-01 | 83.3% | 80.0% |
| 5059099 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.53 | 45.0 | 3.89e-01 | 100.0% | 90.9% |
| 5043484 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 35.0 | 3.80e-01 | 72.2% | 84.4% |
| 3593875 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 40.0 | 3.99e-01 | 87.0% | 83.6% |
D2
high
residues 70-137
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.70 | 40.0 | 5.08e-01 | 72.1% | 100.0% |
| 3le4A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.67 | 36.0 | 3.96e-01 | 72.1% | 61.8% |
| 4adiA02 | 3.30.67.20 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Rubella membrane glycoprotein E1, domain 2 | 0.58 | 43.0 | 4.01e-01 | 80.9% | 70.5% |
| 2js3A01 | 1.10.287.780 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ITPase-like domains | 0.57 | 43.0 | 4.23e-01 | 83.8% | 78.9% |
| 3f2kB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 41.0 | 3.15e-01 | 80.9% | 44.3% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.56 | 40.0 | 3.49e-01 | 95.6% | 49.5% |
| 2c9wA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 37.0 | 3.25e-01 | 70.6% | 69.0% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 37.0 | 3.75e-01 | 72.1% | 84.8% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.54 | 42.0 | 3.48e-01 | 86.8% | 60.0% |
| 1ye8A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 41.0 | 3.13e-01 | 86.8% | 56.1% |
| 2azpA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 37.0 | 3.03e-01 | 83.8% | 89.2% |
| 2pn2A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.51 | 40.0 | 3.27e-01 | 89.7% | 71.5% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3583479 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 40.0 | 4.89e-01 | 72.1% | 97.5% |
| 4003256 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.63 | 39.0 | 4.37e-01 | 77.9% | 84.0% |
| 4025420 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.62 | 37.0 | 2.54e-01 | 70.6% | 17.4% |
| 3215728 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 33.0 | 3.54e-01 | 70.6% | 58.3% |
| 4985708 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 35.0 | 4.00e-01 | 73.5% | 84.4% |
| 4889754 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.60 | 40.0 | 4.28e-01 | 83.8% | 78.3% |
| 4433750 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 39.0 | 2.44e-01 | 76.5% | 93.1% |
| 3939988 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 40.0 | 3.34e-01 | 79.4% | 44.0% |
| 3885750 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.54 | 34.0 | 3.89e-01 | 72.1% | 88.0% |
| 3898271 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.53 | 39.0 | 3.05e-01 | 77.9% | 35.8% |
| 3946165 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.52 | 34.0 | 3.62e-01 | 72.1% | 81.8% |
| 4322686 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.52 | 40.0 | 4.11e-01 | 83.8% | 89.2% |
| 4282238 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 38.0 | 2.18e-01 | 80.9% | 14.6% |
| 4961801 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.51 | 43.0 | 3.14e-01 | 98.5% | 51.2% |
| 3285549 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.50 | 42.0 | 3.02e-01 | 92.6% | 72.0% |