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aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00094

Bact-Vir

aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00094

Identity

Kingdom:
phage

Quality

81.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-117
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02452.24 best PemK_toxin 37.6 3.20e-09 80.2% 72.5%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.87 79.0 7.79e-01 100.0% 90.5%
5uctB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.86 70.0 7.43e-01 100.0% 94.0%
5hk0B00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.85 73.0 7.42e-01 100.0% 92.5%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.84 72.0 7.45e-01 100.0% 95.2%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.83 66.0 6.92e-01 100.0% 90.3%
3jscA00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.81 63.0 6.77e-01 100.0% 93.8%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 39.0 5.19e-01 82.0% 85.5%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 36.0 5.15e-01 79.3% 100.0%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 38.0 5.14e-01 80.2% 93.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 35.0 4.58e-01 79.3% 83.1%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 36.0 5.11e-01 79.3% 100.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 36.0 4.43e-01 85.6% 76.5%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 39.0 5.19e-01 81.1% 98.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 37.0 5.11e-01 79.3% 100.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 35.0 4.74e-01 79.3% 98.1%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 39.0 4.63e-01 81.1% 80.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 37.0 4.34e-01 80.2% 72.8%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 36.0 4.87e-01 79.3% 96.7%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 35.0 4.79e-01 80.2% 100.0%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 37.0 4.68e-01 80.2% 89.6%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 37.0 4.54e-01 81.1% 85.7%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 36.0 4.69e-01 80.2% 96.7%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 36.0 4.39e-01 80.2% 83.6%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.70e-01 82.0% 90.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 36.0 4.30e-01 85.6% 90.5%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 3.95e-01 95.5% 61.4%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.44e-01 99.1% 72.9%
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 25.0 2.81e-01 95.5% 50.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 29.0 3.48e-01 78.4% 77.3%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.53 47.0 4.35e-01 97.3% 85.5%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4950222 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.89 78.0 7.87e-01 100.0% 92.7%
4667326 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.87 79.0 7.82e-01 100.0% 91.3%
1109151 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.86 78.0 7.59e-01 100.0% 87.5%
4645229 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.85 74.0 7.48e-01 100.0% 92.7%
2643543 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.85 79.0 7.67e-01 100.0% 89.3%
1952922 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.84 73.0 7.42e-01 100.0% 92.7%
4008775 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.82 78.0 7.10e-01 100.0% 94.3%
4928262 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.81 73.0 7.35e-01 100.0% 95.5%
4034169 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.80 73.0 6.56e-01 100.0% 73.6%
5065801 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.80 68.0 6.97e-01 100.0% 94.3%
3959465 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.80 69.0 6.48e-01 100.0% 77.7%
3780847 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.80 39.0 3.50e-01 81.1% 35.3%
3965064 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.79 75.0 7.16e-01 100.0% 90.4%
5062749 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.79 71.0 7.09e-01 100.0% 92.1%
4969376 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.77 70.0 6.85e-01 100.0% 90.7%
3416068 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.74 38.0 3.41e-01 81.1% 35.5%
3482868 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 37.0 5.24e-01 78.4% 100.0%
3319789 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 41.0 4.69e-01 81.1% 75.3%
3749194 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 36.0 4.61e-01 77.5% 84.4%
3389662 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.71 42.0 4.92e-01 84.7% 82.5%
3485745 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 38.0 5.10e-01 81.1% 98.3%
3207081 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 39.0 5.02e-01 77.5% 93.8%
3490689 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 37.0 4.59e-01 80.2% 81.4%
3706000 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 43.0 5.17e-01 81.1% 92.0%
3287628 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 39.0 4.97e-01 79.3% 95.3%
3932484 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 36.0 4.70e-01 79.3% 89.1%
3801719 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 36.0 4.58e-01 81.1% 82.9%
3501337 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.69 42.0 4.90e-01 80.2% 85.0%
3929373 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.69 34.0 4.53e-01 78.4% 88.3%
3185321 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 40.0 4.78e-01 82.0% 86.7%
3963504 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 62.0 5.91e-01 100.0% 91.5%
3630782 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.67 40.0 3.65e-01 82.0% 44.8%
3673944 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.67 39.0 3.55e-01 81.1% 42.3%
3723175 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.67 39.0 4.32e-01 81.1% 71.1%
3301015 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 36.0 4.56e-01 81.1% 90.8%
3448975 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.66 36.0 4.50e-01 80.2% 89.2%
3328647 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.66 41.0 4.62e-01 98.2% 82.4%
3437523 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.65 36.0 4.39e-01 91.9% 85.7%
4400641 4.1.1.397 beta barrels › SH3 › SH3 › SH3 › PF29622 0.65 42.0 4.82e-01 79.3% 90.0%
3827886 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.65 41.0 4.77e-01 89.2% 88.7%
3843359 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.64 40.0 4.49e-01 85.6% 81.2%
3195050 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 36.0 3.91e-01 95.5% 65.3%
4118011 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.63 37.0 4.13e-01 81.1% 74.1%
3672735 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.63 34.0 4.20e-01 85.6% 87.7%
3738126 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 35.0 3.89e-01 99.1% 66.7%
3678872 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.63 39.0 4.65e-01 81.1% 92.0%
4542692 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 36.0 4.01e-01 79.3% 72.9%
3829754 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.62 43.0 4.60e-01 92.8% 82.1%
3257650 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.71e-01 90.1% 90.6%
3515762 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.61 36.0 4.26e-01 86.5% 85.3%
4614716 4.1.1.292 beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.60 37.0 4.52e-01 77.5% 97.1%
4951886 3174.4.1.0 beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain 0.60 36.0 3.94e-01 76.6% 73.3%
3700378 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 31.0 3.94e-01 77.5% 90.0%
3705995 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 40.0 4.61e-01 78.4% 97.5%
3738626 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.58 43.0 3.93e-01 97.3% 59.3%
3997949 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 32.0 3.51e-01 96.4% 65.6%
3591144 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 31.0 2.87e-01 76.6% 38.7%
4608704 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 33.0 2.62e-01 82.0% 26.2%
3683850 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.57 43.0 4.37e-01 91.9% 80.9%
3424637 4.1.1.313 beta barrels › SH3 › SH3 › SH3 › DUF7912 0.57 41.0 4.35e-01 81.1% 87.4%
3503000 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.29e-01 81.1% 90.6%
3684460 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.56 43.0 4.61e-01 93.7% 93.7%
3246086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 34.0 3.64e-01 92.8% 70.5%
3167531 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.56 41.0 3.84e-01 98.2% 62.2%
3581336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.76e-01 100.0% 90.9%
3022070 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.55 38.0 3.82e-01 79.3% 69.3%
3797642 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 47.0 3.95e-01 98.2% 55.1%
3176702 219.1.1.115 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.55 37.0 3.31e-01 85.6% 49.7%
3931715 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 40.0 4.28e-01 77.5% 96.0%
3394559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 39.0 4.00e-01 80.2% 79.0%
3339162 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.52 43.0 4.12e-01 89.2% 83.8%
3354076 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.52 44.0 4.15e-01 90.1% 84.6%
3241890 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 34.0 3.57e-01 92.8% 73.0%
3200839 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.52 39.0 3.43e-01 95.5% 54.4%
3363751 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.52 39.0 4.06e-01 84.7% 84.8%
3315510 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.51 39.0 4.01e-01 87.4% 82.7%
D2 high residues 136-229
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 43.0 5.20e-01 83.0% 85.5%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 38.0 4.56e-01 79.8% 76.9%
5hk0B00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.65 59.0 5.70e-01 100.0% 93.5%
3jscA00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 5.73e-01 100.0% 94.8%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.64 59.0 5.68e-01 100.0% 96.2%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.64 58.0 5.42e-01 100.0% 91.4%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.63 58.0 5.63e-01 100.0% 91.3%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 35.0 4.03e-01 77.7% 76.1%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 38.0 4.27e-01 80.9% 80.0%
5uctB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.61 55.0 5.43e-01 100.0% 95.0%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 36.0 4.04e-01 80.9% 76.7%
4glkA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.60 54.0 4.48e-01 100.0% 83.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.59 42.0 4.60e-01 89.4% 90.9%
2xdbA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.58 51.0 4.32e-01 100.0% 87.7%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.56 49.0 4.33e-01 93.6% 72.2%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 4.45e-01 93.6% 97.4%
2xgjA05 2.40.30.300 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 50.0 4.41e-01 98.9% 83.1%
4ii1A01 2.30.30.1190 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.42e-01 80.9% 93.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961922 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 64.0 6.04e-01 100.0% 93.6%
3319789 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.67 45.0 4.72e-01 81.9% 75.3%
2832038 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.65 60.0 5.57e-01 100.0% 89.6%
3761319 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.65 41.0 4.84e-01 78.7% 92.3%
3951374 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.65 59.0 5.67e-01 98.9% 92.4%
4993118 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.63 43.0 4.48e-01 84.0% 77.6%
3955085 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.61 55.0 5.41e-01 98.9% 96.0%
3959531 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 37.0 4.15e-01 80.9% 82.9%
3600929 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.18e-01 79.8% 75.3%
3907112 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.58 33.0 3.85e-01 76.6% 80.0%
3454181 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.58 46.0 3.63e-01 83.0% 45.6%
4645408 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.57 50.0 3.91e-01 97.9% 69.3%
3668787 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.56 46.0 4.52e-01 87.2% 83.0%
3425429 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.54 45.0 4.36e-01 89.4% 81.0%
3645842 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.54 36.0 3.84e-01 83.0% 81.2%
3785005 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 35.0 3.82e-01 73.4% 80.8%
4323235 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.52 40.0 3.88e-01 84.0% 75.5%
3982999 4.1.1.60 beta barrels › SH3 › SH3 › SH3 › YccV-like 0.51 42.0 4.19e-01 89.4% 88.0%
4348032 2.1.1.167 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RseC_MucC 0.51 32.0 3.73e-01 77.7% 87.1%
3480655 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.50 41.0 3.63e-01 86.2% 80.0%