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aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00107
Bact-Viraot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00107
Identity
- Kingdom:
- phage
Quality
63.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-35_48-161
Domain cluster:
rep: IMGVR_UViG_2554235504_000004-2554235504-2556200050__D89-198
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.72 | 42.0 | 4.77e-01 | 85.2% | 76.9% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.71 | 62.0 | 5.79e-01 | 92.6% | 88.5% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.70 | 42.0 | 4.69e-01 | 73.0% | 75.3% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.70 | 41.0 | 5.06e-01 | 71.3% | 100.0% |
| 1uhzA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.69 | 45.0 | 5.16e-01 | 77.0% | 91.0% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 46.0 | 5.14e-01 | 89.3% | 92.6% |
| 3f8xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 37.0 | 3.63e-01 | 80.3% | 60.6% |
| 3g8yA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 38.0 | 2.68e-01 | 71.3% | 61.9% |
| 3h3hB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 34.0 | 3.42e-01 | 79.5% | 62.5% |
| 2gexA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 38.0 | 3.59e-01 | 73.0% | 71.9% |
| 2joxA00 | 2.60.40.4240 | Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill | 0.53 | 37.0 | 3.93e-01 | 84.4% | 82.1% |
| 5aigA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 35.0 | 3.57e-01 | 70.5% | 66.1% |
| 3f14A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 32.0 | 3.37e-01 | 74.6% | 64.3% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 27.0 | 3.23e-01 | 79.5% | 74.1% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 3.96e-01 | 75.4% | 85.2% |
| 3f40A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 31.0 | 3.21e-01 | 70.5% | 62.2% |
| 1x7dB01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.51 | 40.0 | 3.62e-01 | 82.8% | 76.9% |
| 3ebtA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 3.55e-01 | 83.6% | 67.2% |
| 4mjdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 33.0 | 3.43e-01 | 75.4% | 69.9% |
| 3kkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 35.0 | 3.34e-01 | 70.5% | 59.7% |
| 1z54A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 35.0 | 3.46e-01 | 71.3% | 78.8% |
| 3hdjA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.50 | 40.0 | 3.86e-01 | 85.2% | 92.9% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.50 | 39.0 | 3.67e-01 | 82.8% | 89.9% |
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 36.0 | 3.58e-01 | 76.2% | 71.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3655368 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.78 | 46.0 | 5.67e-01 | 77.9% | 94.7% |
| 3328759 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.75 | 45.0 | 5.63e-01 | 72.1% | 98.7% |
| 3390564 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.74 | 45.0 | 4.89e-01 | 88.5% | 71.4% |
| 3816855 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.72 | 62.0 | 6.17e-01 | 91.0% | 88.8% |
| 3887511 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.69 | 46.0 | 5.06e-01 | 86.1% | 83.0% |
| 3284847 | 243.1.1.80 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 | 0.68 | 44.0 | 4.65e-01 | 73.0% | 73.1% |
| 4567415 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.67 | 44.0 | 4.84e-01 | 87.7% | 82.0% |
| 3610755 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 50.0 | 5.19e-01 | 100.0% | 89.6% |
| 4649416 | 330.6.1.0 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain | 0.63 | 38.0 | 4.48e-01 | 77.9% | 87.1% |
| 3638561 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 46.0 | 4.63e-01 | 78.7% | 91.2% |
| 3602244 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 56.0 | 5.27e-01 | 99.2% | 84.0% |
| 3615430 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 42.0 | 4.58e-01 | 73.8% | 93.0% |
| 3749345 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 34.0 | 4.09e-01 | 83.6% | 87.5% |
| 3287136 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.56 | 37.0 | 3.68e-01 | 75.4% | 63.1% |
| 3749143 | 243.3.1.20 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 | 0.54 | 38.0 | 3.80e-01 | 72.1% | 87.2% |
| 4967348 | 814.1.1.0 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase | 0.54 | 42.0 | 4.40e-01 | 82.8% | 100.0% |
| 5039587 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.54 | 38.0 | 3.75e-01 | 78.7% | 68.5% |
| 2549486 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.53 | 39.0 | 3.72e-01 | 80.3% | 66.0% |
| 169507 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.52 | 32.0 | 3.37e-01 | 76.2% | 66.1% |
| 5076453 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.52 | 36.0 | 3.67e-01 | 70.5% | 76.5% |
| 5033887 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.52 | 34.0 | 3.52e-01 | 75.4% | 70.4% |
| 5025792 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.52 | 38.0 | 3.96e-01 | 78.7% | 91.3% |
| 4032561 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 37.0 | 2.97e-01 | 73.8% | 47.4% |
| 137314 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.51 | 35.0 | 3.34e-01 | 70.5% | 59.7% |
| 153416 | 5.1.2.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF5005 | 0.50 | 36.0 | 2.52e-01 | 86.1% | 22.4% |
| 361002 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.50 | 36.0 | 3.57e-01 | 76.2% | 71.1% |
D2
high
residues 288-358
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xmzA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.62 | 37.0 | 2.47e-01 | 74.6% | 15.8% |
| 1dvhA00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.57 | 44.0 | 4.25e-01 | 83.1% | 87.3% |
| 1ffyA03 | 1.10.730.20 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › | 0.56 | 49.0 | 3.30e-01 | 100.0% | 49.8% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.56 | 38.0 | 3.17e-01 | 70.4% | 80.8% |
| 4gc0A02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.53 | 44.0 | 3.16e-01 | 95.8% | 44.7% |
| 5n17A01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.52 | 37.0 | 3.32e-01 | 74.6% | 86.5% |
| 2ykgA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.52 | 37.0 | 3.08e-01 | 74.6% | 88.7% |
| 1z1vA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.52 | 35.0 | 3.56e-01 | 70.4% | 78.6% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.52 | 39.0 | 3.36e-01 | 83.1% | 60.2% |
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.51 | 35.0 | 3.67e-01 | 77.5% | 80.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3263101 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.62 | 44.0 | 3.67e-01 | 74.6% | 50.8% |
| 1176211 | 108.2.1.1 ↗ | alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › PBP_GOBP | 0.54 | 41.0 | 3.28e-01 | 84.5% | 53.8% |
| 3387850 | 107.1.1.1 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C | 0.54 | 42.0 | 3.79e-01 | 88.7% | 66.7% |
| 4512912 | 107.1.1.1 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C | 0.51 | 40.0 | 3.84e-01 | 88.7% | 82.4% |