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aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00120

Bact-Vir

aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00120

Identity

Kingdom:
phage

Quality

53.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-105
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 50.0 5.53e-01 88.1% 91.1%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.65 54.0 5.19e-01 100.0% 82.1%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 52.0 4.31e-01 94.9% 49.5%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.62 43.0 3.03e-01 72.9% 22.8%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 39.0 2.90e-01 78.0% 24.2%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 40.0 2.49e-01 71.2% 68.9%
3x1lB02 3.30.1040.70 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.59 42.0 4.12e-01 74.6% 95.2%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 43.0 3.45e-01 83.1% 74.2%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 39.0 3.50e-01 74.6% 93.4%
1aihA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.56 49.0 3.57e-01 100.0% 57.6%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 45.0 3.49e-01 93.2% 40.4%
3qwnD01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.55 40.0 3.93e-01 96.6% 71.4%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 34.0 3.78e-01 79.7% 88.9%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280385 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.73 49.0 5.05e-01 79.7% 74.5%
1509336 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.71 58.0 5.41e-01 100.0% 72.6%
5077487 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.70 59.0 4.47e-01 100.0% 39.3%
4962104 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.70 58.0 4.51e-01 100.0% 41.5%
3164021 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.70 62.0 4.82e-01 100.0% 83.1%
4930329 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 50.0 5.30e-01 93.2% 92.0%
3208295 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.69 51.0 4.02e-01 93.2% 36.9%
1884919 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.68 50.0 4.29e-01 79.7% 91.6%
4057742 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.68 52.0 5.03e-01 91.5% 75.4%
3386077 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.67 46.0 5.06e-01 86.4% 95.6%
3536326 1073.1.1.0 ↗ alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) 0.67 48.0 4.15e-01 76.3% 94.4%
4311788 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.66 55.0 4.45e-01 100.0% 47.8%
3688344 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.65 50.0 4.07e-01 94.9% 43.5%
4994226 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 53.0 4.24e-01 98.3% 44.8%
1170111 243.1.1.27 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4348 0.64 43.0 3.58e-01 71.2% 78.4%
5004174 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.64 53.0 4.17e-01 100.0% 44.0%
4969039 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.63 43.0 3.04e-01 72.9% 22.7%
3721821 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.63 46.0 2.93e-01 78.0% 92.9%
4009232 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.63 43.0 3.05e-01 72.9% 22.7%
4983452 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.63 44.0 3.07e-01 72.9% 22.6%
5020098 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 51.0 4.86e-01 100.0% 80.0%
4329624 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.62 49.0 4.23e-01 100.0% 52.4%
9851 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.62 43.0 3.01e-01 72.9% 22.4%
4477149 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 50.0 4.12e-01 93.2% 49.1%
3177048 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.61 48.0 4.24e-01 91.5% 97.9%
4346151 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 51.0 3.98e-01 94.9% 60.8%
3215391 304.9.1.25 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_7 0.59 43.0 3.19e-01 78.0% 71.5%
3627987 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.59 41.0 4.63e-01 79.7% 95.6%
4220608 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.59 45.0 4.21e-01 94.9% 66.7%
3712891 136.1.1.0 ↗ alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases 0.57 43.0 2.73e-01 81.4% 23.5%
4263140 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 42.0 4.07e-01 84.7% 88.6%
3173156 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.55 38.0 3.51e-01 72.9% 58.7%
3890507 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.55 47.0 3.17e-01 94.9% 27.0%
3893735 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 47.0 3.84e-01 98.3% 87.0%
4027440 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 46.0 3.88e-01 100.0% 90.0%
3190157 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 3.90e-01 91.5% 71.8%
3840052 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 29.0 3.40e-01 88.1% 77.5%
3729338 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.51 44.0 2.55e-01 96.6% 47.5%
3183246 4065.1.1.0 ↗ a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related 0.50 34.0 2.08e-01 72.9% 88.5%
D2 medium residues 1-46_106-197
PDB