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aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00160
Bact-Viraot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00160
Identity
- Kingdom:
- phage
Quality
97.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-70
Domain cluster:
rep: SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00200__D2-69
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fu0A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.88 | 82.0 | 7.52e-01 | 100.0% | 89.7% |
| 1jelP00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.87 | 80.0 | 7.42e-01 | 100.0% | 91.8% |
| 5t17A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.81 | 73.0 | 6.83e-01 | 100.0% | 92.9% |
| 3tiiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.67 | 50.0 | 5.13e-01 | 82.6% | 100.0% |
| 3r4cA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.66 | 55.0 | 4.93e-01 | 94.2% | 82.2% |
| 2hf2B02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.66 | 56.0 | 4.84e-01 | 94.2% | 82.2% |
| 3fzqA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.66 | 54.0 | 4.66e-01 | 94.2% | 80.9% |
| 4hiaA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.65 | 55.0 | 4.05e-01 | 91.3% | 84.1% |
| 1wmdA02 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 57.0 | 4.81e-01 | 100.0% | 85.5% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.63 | 50.0 | 4.96e-01 | 88.4% | 93.1% |
| 2rbkA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.63 | 51.0 | 4.63e-01 | 94.2% | 81.2% |
| 3glkA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.63 | 47.0 | 4.93e-01 | 81.2% | 100.0% |
| 2h5eA03 | 3.30.70.3280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III | 0.62 | 41.0 | 3.36e-01 | 100.0% | 35.0% |
| 2dwcB02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.61 | 44.0 | 4.64e-01 | 82.6% | 91.5% |
| 6vtmB00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 46.0 | 4.18e-01 | 84.1% | 93.8% |
| 1oeyL00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 46.0 | 4.18e-01 | 85.5% | 82.7% |
| 7xhzA01 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.60 | 48.0 | 4.09e-01 | 92.8% | 85.4% |
| 2kqaA00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.59 | 44.0 | 3.69e-01 | 79.7% | 91.7% |
| 1u9tA02 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.58 | 49.0 | 3.79e-01 | 98.6% | 72.2% |
| 4dbgA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 44.0 | 4.18e-01 | 85.5% | 89.0% |
| 1dc1A01 | 3.40.91.10 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.57 | 45.0 | 3.29e-01 | 92.8% | 80.2% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 43.0 | 4.39e-01 | 87.0% | 100.0% |
| 1twfA04 | 3.30.1490.180 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii | 0.55 | 43.0 | 4.46e-01 | 92.8% | 96.8% |
| 2nn6D00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.55 | 41.0 | 2.99e-01 | 81.2% | 35.6% |
| 8t5tA01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 40.0 | 2.97e-01 | 79.7% | 89.7% |
| 1a0iA01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.53 | 44.0 | 4.22e-01 | 97.1% | 86.7% |
| 3hcyA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 42.0 | 3.44e-01 | 91.3% | 88.3% |
| 5bncB01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 36.0 | 2.93e-01 | 73.9% | 91.3% |
| 6kghA02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 42.0 | 3.36e-01 | 92.8% | 88.3% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 37.0 | 3.55e-01 | 79.7% | 92.9% |
| 3e4vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 40.0 | 3.01e-01 | 88.4% | 56.3% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588312 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.90 | 84.0 | 7.65e-01 | 100.0% | 88.6% |
| 5064118 | 322.1.1.0 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like | 0.89 | 83.0 | 7.53e-01 | 100.0% | 88.6% |
| 4103307 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.89 | 82.0 | 7.61e-01 | 100.0% | 91.8% |
| 4963717 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.88 | 82.0 | 7.39e-01 | 100.0% | 88.9% |
| 3164579 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.87 | 79.0 | 6.82e-01 | 100.0% | 77.1% |
| 3948410 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.87 | 79.0 | 7.20e-01 | 100.0% | 87.8% |
| 4008836 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.86 | 79.0 | 7.37e-01 | 100.0% | 94.1% |
| 4009784 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.86 | 79.0 | 7.21e-01 | 100.0% | 93.3% |
| 3979258 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.86 | 79.0 | 7.19e-01 | 100.0% | 88.9% |
| 3945048 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.86 | 79.0 | 7.31e-01 | 100.0% | 91.8% |
| 3972112 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.86 | 78.0 | 7.29e-01 | 100.0% | 92.9% |
| 2879452 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.84 | 77.0 | 7.18e-01 | 100.0% | 92.9% |
| 4568147 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.84 | 77.0 | 7.00e-01 | 100.0% | 87.6% |
| 3972149 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.84 | 76.0 | 7.28e-01 | 100.0% | 96.2% |
| 5056082 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.83 | 75.0 | 6.40e-01 | 100.0% | 80.9% |
| 3978801 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.82 | 74.0 | 6.89e-01 | 100.0% | 91.8% |
| 4447647 | 322.1.1.5 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PF29819 | 0.71 | 64.0 | 5.54e-01 | 100.0% | 80.8% |
| 154953 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.67 | 57.0 | 4.19e-01 | 94.2% | 83.1% |
| 1585470 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.65 | 54.0 | 4.83e-01 | 94.2% | 77.2% |
| 3963940 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.64 | 53.0 | 4.76e-01 | 94.2% | 83.0% |
| 3726962 | 304.9.1.94 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_YTH1 | 0.63 | 48.0 | 4.21e-01 | 100.0% | 54.4% |
| 4985871 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.62 | 55.0 | 4.78e-01 | 100.0% | 83.8% |
| 3873915 | 219.1.1.81 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY-3_4_CD | 0.62 | 51.0 | 3.35e-01 | 98.6% | 72.3% |
| 3309238 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.61 | 47.0 | 4.47e-01 | 100.0% | 69.4% |
| None | — | 0.59 | 51.0 | 3.40e-01 | 100.0% | 42.7% | |
| 3773242 | 1207.1.1.1 ↗ | a+b two layers › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR_C | 0.58 | 51.0 | 3.35e-01 | 100.0% | 41.3% |
| 3500029 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.57 | 45.0 | 4.60e-01 | 87.0% | 90.8% |
| 4011274 | 1207.1.1.0 ↗ | a+b two layers › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain | 0.57 | 49.0 | 3.36e-01 | 98.6% | 53.8% |
| 3556111 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.57 | 45.0 | 4.62e-01 | 87.0% | 92.3% |
| 3733629 | 4951.1.1.1 ↗ | alpha arrays › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2 | 0.57 | 45.0 | 4.61e-01 | 87.0% | 92.3% |
| 3684143 | 1207.1.1.1 ↗ | a+b two layers › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR_C | 0.57 | 48.0 | 3.27e-01 | 100.0% | 43.8% |
| 3420159 | 221.1.1.44 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD | 0.56 | 43.0 | 4.23e-01 | 85.5% | 92.0% |
| 3254772 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.56 | 45.0 | 3.24e-01 | 89.9% | 97.7% |
| 3711495 | 4951.1.1.1 ↗ | alpha arrays › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2 | 0.56 | 43.0 | 4.54e-01 | 92.8% | 98.3% |
| 3600674 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.56 | 42.0 | 4.55e-01 | 81.2% | 100.0% |
| 4999273 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.56 | 42.0 | 2.44e-01 | 79.7% | 76.6% |
| 4359892 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.56 | 43.0 | 4.17e-01 | 87.0% | 85.0% |
| 4003832 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 41.0 | 4.08e-01 | 81.2% | 89.3% |
| 3078875 | 221.1.1.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX | 0.55 | 47.0 | 3.61e-01 | 100.0% | 53.1% |
| 3776836 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 44.0 | 3.83e-01 | 92.8% | 73.6% |
| 3778745 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.54 | 41.0 | 3.84e-01 | 85.5% | 76.7% |
| 3489039 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 45.0 | 4.02e-01 | 100.0% | 89.5% |
| 3475431 | 133.1.1.0 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) | 0.53 | 42.0 | 2.98e-01 | 91.3% | 72.5% |
| 4329890 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.53 | 39.0 | 3.03e-01 | 89.9% | 36.0% |
| 3265108 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 42.0 | 3.78e-01 | 89.9% | 88.0% |
| 3599087 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 40.0 | 3.86e-01 | 85.5% | 91.3% |
| 4456198 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 39.0 | 2.88e-01 | 89.9% | 30.3% |
| 146288 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.52 | 35.0 | 3.82e-01 | 84.1% | 96.1% |
| 4645846 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.52 | 38.0 | 2.88e-01 | 89.9% | 31.8% |
| 4478999 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.52 | 38.0 | 2.89e-01 | 91.3% | 31.8% |
| 4403519 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 2.94e-01 | 89.9% | 32.9% |
| 4646072 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.51 | 39.0 | 2.92e-01 | 92.8% | 32.9% |
| 5042462 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.51 | 38.0 | 2.90e-01 | 89.9% | 33.3% |
| 5054122 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.51 | 38.0 | 2.96e-01 | 91.3% | 35.0% |
| 4344487 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.51 | 38.0 | 2.89e-01 | 94.2% | 33.3% |
| 3523119 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.51 | 39.0 | 2.62e-01 | 85.5% | 40.7% |
| 4527101 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.51 | 38.0 | 2.93e-01 | 91.3% | 35.0% |
| 4507638 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.51 | 38.0 | 2.87e-01 | 94.2% | 33.3% |
| 4646862 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.51 | 37.0 | 3.23e-01 | 88.4% | 50.0% |
| 4221024 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 38.0 | 2.81e-01 | 95.7% | 28.3% |
| 4232371 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.50 | 39.0 | 3.30e-01 | 85.5% | 75.0% |
| 3177995 | 5050.1.1.32 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn | 0.50 | 40.0 | 2.40e-01 | 88.4% | 27.5% |