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aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00167

Bact-Vir

aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00167

Identity

Kingdom:
phage

Quality

87.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-65
PDB
Domain cluster: rep: STL6-S73_scaffold_1_prodigal-single.1__X__X__00199__D4-63
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.67 39.0 3.95e-01 83.6% 58.1%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 39.0 4.04e-01 77.0% 63.8%
2g80A02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.65 51.0 4.79e-01 88.5% 98.7%
1wkbA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.57 48.0 3.32e-01 96.7% 97.8%
2gmsB01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 41.0 2.78e-01 83.6% 91.3%
5mmiJ02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.54 36.0 3.47e-01 83.6% 60.9%
4zudA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 36.0 2.43e-01 70.5% 46.5%
2oo2A00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.53 43.0 4.07e-01 90.2% 72.4%
5fiiB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 36.0 3.38e-01 72.1% 100.0%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.51 38.0 3.31e-01 78.7% 61.1%
5x8rr00 4.10.640.10 Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › Ribosomal protein S18 0.50 39.0 3.84e-01 88.5% 79.7%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952984 268.2.1.7 ↗ a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › DUF4012 0.64 53.0 3.71e-01 91.8% 44.1%
3790689 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 32.0 3.10e-01 70.5% 42.9%
4973920 268.2.1.7 ↗ a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › DUF4012 0.57 47.0 3.25e-01 91.8% 43.8%
4408837 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.56 43.0 3.28e-01 83.6% 52.4%
3355500 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.53 38.0 2.27e-01 77.0% 24.0%
3610592 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.53 39.0 2.84e-01 82.0% 64.7%
3723935 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 40.0 3.50e-01 83.6% 72.6%
4247728 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.52 39.0 3.02e-01 83.6% 60.0%
4950017 304.134.1.3 ↗ a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › PF26798 0.52 41.0 3.65e-01 85.2% 76.5%