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aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00194

Bact-Vir

aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00194

Identity

Kingdom:
phage

Quality

84.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-87
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14192.13 best DUF4314 91.9 2.90e-26 88.3% 94.2%
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 54.0 6.41e-01 72.7% 100.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 48.0 5.92e-01 75.3% 100.0%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.79 62.0 6.52e-01 83.1% 94.2%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 54.0 5.27e-01 80.5% 65.9%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 53.0 5.88e-01 76.6% 90.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 55.0 5.61e-01 75.3% 82.7%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 56.0 5.96e-01 77.9% 100.0%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 53.0 5.89e-01 74.0% 100.0%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 53.0 5.84e-01 74.0% 96.8%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 52.0 5.84e-01 72.7% 100.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 53.0 5.79e-01 75.3% 100.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 52.0 5.38e-01 74.0% 86.5%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 55.0 6.00e-01 88.3% 95.2%
5yprA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 53.0 5.24e-01 76.6% 100.0%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 4.83e-01 77.9% 82.9%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 51.0 5.68e-01 74.0% 100.0%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 47.0 5.35e-01 76.6% 96.2%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 49.0 5.45e-01 70.1% 100.0%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 50.0 5.54e-01 72.7% 95.0%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 59.0 5.70e-01 89.6% 86.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 51.0 5.40e-01 75.3% 86.8%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 54.0 5.87e-01 87.0% 98.4%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.71 54.0 5.50e-01 81.8% 90.8%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 51.0 5.52e-01 76.6% 98.5%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 50.0 5.46e-01 74.0% 98.3%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 50.0 5.16e-01 76.6% 91.9%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 53.0 5.79e-01 81.8% 100.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 5.39e-01 74.0% 93.5%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.74e-01 84.4% 98.6%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.40e-01 79.2% 85.9%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 53.0 5.50e-01 84.4% 94.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 5.41e-01 87.0% 89.6%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 55.0 5.41e-01 90.9% 85.7%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 52.0 4.94e-01 90.9% 70.3%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.45e-01 83.1% 81.0%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 5.45e-01 87.0% 92.9%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 5.17e-01 79.2% 98.5%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 5.04e-01 83.1% 100.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 46.0 4.85e-01 75.3% 100.0%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.65 49.0 3.71e-01 81.8% 90.4%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.64 55.0 4.74e-01 100.0% 81.9%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.63 48.0 3.73e-01 83.1% 94.9%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.62 56.0 4.96e-01 100.0% 90.8%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 54.0 4.78e-01 98.7% 91.2%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 49.0 3.81e-01 88.3% 49.1%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 4.59e-01 94.8% 97.5%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 45.0 4.77e-01 81.8% 100.0%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.58 47.0 3.77e-01 92.2% 80.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 49.0 4.33e-01 93.5% 73.9%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 47.0 4.22e-01 89.6% 67.3%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.57 45.0 3.60e-01 88.3% 79.5%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 48.0 4.44e-01 93.5% 78.2%
4dixA02 2.30.29.140 Mainly Beta › Roll › PH-domain like › 0.56 45.0 3.90e-01 89.6% 90.4%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.53 36.0 4.10e-01 79.2% 98.2%
1z24A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.49e-01 100.0% 74.1%
4k4kA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.52 44.0 3.82e-01 97.4% 86.6%
4xxfA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.51 42.0 2.99e-01 93.5% 92.4%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3256431 4.1.1.360 beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.85 54.0 5.34e-01 75.3% 62.5%
3989485 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.82 52.0 6.31e-01 76.6% 100.0%
3200493 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.81 47.0 5.53e-01 71.4% 81.8%
3231177 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.81 51.0 6.26e-01 75.3% 100.0%
3523979 604.12.1.118 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF4537 0.81 51.0 5.78e-01 74.0% 83.3%
3671396 4.1.1.316 beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.81 62.0 6.35e-01 89.6% 84.9%
3290564 4.1.1.292 beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.80 64.0 6.02e-01 84.4% 90.0%
4024913 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 54.0 5.81e-01 85.7% 83.1%
3993250 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.79 55.0 6.32e-01 87.0% 100.0%
3821920 4.1.1.283 beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2 0.78 54.0 6.30e-01 81.8% 100.0%
3920026 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.78 55.0 3.93e-01 84.4% 26.7%
3491785 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.78 62.0 5.36e-01 84.4% 97.4%
3480491 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 60.0 6.11e-01 81.8% 85.3%
4953223 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.78 49.0 5.89e-01 77.9% 100.0%
3478898 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 54.0 5.88e-01 79.2% 86.2%
3397846 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 52.0 6.08e-01 83.1% 98.2%
3222147 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 57.0 6.34e-01 83.1% 100.0%
3220797 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.77 59.0 5.27e-01 80.5% 95.2%
3501574 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.77 61.0 6.21e-01 84.4% 98.7%
3779830 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.77 57.0 5.40e-01 80.5% 66.7%
3573262 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.76 55.0 5.22e-01 75.3% 66.7%
3999508 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 58.0 6.09e-01 80.5% 95.7%
3921563 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 55.0 5.47e-01 75.3% 76.2%
3629145 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 55.0 5.96e-01 76.6% 96.9%
3756676 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.76 61.0 5.51e-01 84.4% 72.0%
3556321 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.76 60.0 6.00e-01 85.7% 95.0%
3593607 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 52.0 6.08e-01 72.7% 100.0%
3939408 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 58.0 6.29e-01 81.8% 98.5%
3868320 4.1.1.65 beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.75 57.0 6.15e-01 93.5% 95.4%
3930456 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 56.0 6.03e-01 85.7% 92.3%
3702915 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 53.0 5.87e-01 74.0% 98.3%
3241817 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 55.0 6.15e-01 85.7% 98.3%
3513923 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 53.0 5.45e-01 75.3% 80.0%
5022448 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 58.0 5.94e-01 84.4% 100.0%
4949773 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.74 56.0 4.51e-01 83.1% 42.8%
3936726 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 51.0 5.89e-01 79.2% 100.0%
3907870 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 54.0 5.44e-01 77.9% 77.2%
3498145 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 53.0 5.71e-01 75.3% 93.8%
4950222 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.73 56.0 4.93e-01 80.5% 82.7%
3510676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.01e-01 87.0% 62.1%
3415045 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 52.0 5.49e-01 75.3% 85.7%
3372822 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 59.0 5.97e-01 88.3% 88.0%
3554995 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 52.0 5.49e-01 75.3% 85.7%
3600486 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 52.0 4.78e-01 75.3% 58.0%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 59.0 5.74e-01 88.3% 85.9%
3790978 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 55.0 5.76e-01 80.5% 92.9%
3929260 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 49.0 5.69e-01 79.2% 98.2%
3941320 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.73 54.0 5.46e-01 85.7% 80.0%
3810217 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 46.0 5.46e-01 87.0% 100.0%
3491137 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 52.0 5.77e-01 75.3% 98.3%
3621642 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 56.0 5.52e-01 81.8% 88.7%
3441677 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 46.0 5.52e-01 77.9% 100.0%
3556601 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.72 58.0 6.27e-01 87.0% 100.0%
3572393 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.72 56.0 5.87e-01 85.7% 92.9%
3514453 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 51.0 5.17e-01 74.0% 81.3%
4003717 4.1.1.50 beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.71 55.0 5.63e-01 85.7% 85.3%
3521739 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 51.0 4.96e-01 75.3% 70.6%
3544925 4.1.1.50 beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.71 58.0 5.14e-01 88.3% 66.4%
3623890 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.71 57.0 5.51e-01 85.7% 83.5%
2561577 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.71 53.0 5.86e-01 89.6% 100.0%
4091771 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 52.0 5.78e-01 81.8% 98.3%
3879164 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.70 51.0 5.22e-01 79.2% 78.7%
3511551 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.85e-01 84.4% 100.0%
4994895 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.70 56.0 5.60e-01 87.0% 96.2%
3373583 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 57.0 5.99e-01 85.7% 97.1%
3592332 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.00e-01 84.4% 74.3%
4028731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.94e-01 83.1% 100.0%
3893368 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.70 53.0 5.72e-01 81.8% 95.4%
3635127 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.70 50.0 5.51e-01 79.2% 95.0%
3828371 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 59.0 5.71e-01 90.9% 85.9%
3902139 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.70 55.0 5.71e-01 84.4% 94.3%
3413864 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 54.0 4.19e-01 83.1% 75.2%
4134876 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.69 58.0 4.48e-01 90.9% 69.1%
5024227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.68e-01 83.1% 100.0%
3487936 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.27e-01 77.9% 91.4%
3797642 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 4.44e-01 94.8% 68.1%
403788 4.1.1.100 beta barrels › SH3 › SH3 › SH3 › SH3_11 0.68 52.0 5.69e-01 85.7% 98.4%
3304602 4.1.1.427 beta barrels › SH3 › SH3 › SH3 › F-box 0.68 55.0 5.14e-01 87.0% 84.2%
3970000 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.02e-01 87.0% 78.0%
4028659 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.02e-01 79.2% 87.5%
3494765 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.67 51.0 3.70e-01 81.8% 51.8%
3924760 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 54.0 5.13e-01 89.6% 76.7%
1889033 2004.1.1.203 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 0.64 49.0 3.43e-01 85.7% 24.9%
3783160 4.1.1.308 beta barrels › SH3 › SH3 › SH3 › PF31073 0.64 49.0 5.30e-01 87.0% 98.5%
3605922 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 4.87e-01 92.2% 95.0%
3781209 4.1.1.308 beta barrels › SH3 › SH3 › SH3 › PF31073 0.62 51.0 4.67e-01 89.6% 68.0%
138887 1.1.5.32 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZNR 0.60 54.0 4.67e-01 98.7% 88.9%
3594578 4.18.1.0 beta barrels › SH3 › Plus3 › Plus3 0.58 47.0 4.08e-01 88.3% 83.3%
3247934 1.1.7.41 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.57 46.0 4.33e-01 87.0% 72.6%
3871253 220.1.1.122 beta barrels › PH domain-like › PH domain-like › PH domain-like › C2_SHIP1-2_first 0.56 43.0 3.58e-01 84.4% 80.7%
3479384 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 44.0 3.41e-01 94.8% 61.4%
3325200 3468.1.1.1 a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.54 38.0 3.32e-01 75.3% 91.2%