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aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00197

Bact-Vir

aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00197

Identity

Kingdom:
phage

Quality

88.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-55
PDB
Domain cluster: representative
D2 high residues 68-135
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.77 45.0 5.09e-01 80.9% 78.4%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 46.0 4.94e-01 76.5% 79.7%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 5.04e-01 77.9% 93.0%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 5.35e-01 77.9% 100.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 5.03e-01 80.9% 79.2%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.83e-01 82.4% 76.9%
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 50.0 3.59e-01 80.9% 37.6%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 4.76e-01 80.9% 83.3%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 4.22e-01 80.9% 67.7%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.63 48.0 3.84e-01 82.4% 47.4%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.62 34.0 2.98e-01 98.5% 37.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.65e-01 83.8% 76.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.74e-01 80.9% 87.1%
1m9sA03 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.40e-01 79.4% 89.3%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.53e-01 97.1% 65.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 3.67e-01 80.9% 48.5%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 44.0 3.34e-01 80.9% 39.9%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.10e-01 80.9% 72.2%
1xqbA01 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.59 45.0 3.86e-01 82.4% 60.6%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 4.56e-01 79.4% 95.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 38.0 4.29e-01 75.0% 100.0%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 3.87e-01 76.5% 68.5%
1k82B01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.56 43.0 3.55e-01 83.8% 64.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 3.86e-01 80.9% 66.2%
4ojuA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.56 39.0 3.07e-01 73.5% 88.7%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 41.0 3.61e-01 85.3% 51.9%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 3.73e-01 100.0% 58.9%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.42e-01 85.3% 47.1%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.43e-01 97.1% 56.1%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 44.0 2.91e-01 95.6% 33.6%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 38.0 2.96e-01 82.4% 48.8%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.51 43.0 3.65e-01 97.1% 95.9%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 42.0 3.00e-01 98.5% 66.4%
3fbsB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 3.18e-01 100.0% 94.1%
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 34.0 3.05e-01 89.7% 51.1%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 40.0 3.33e-01 85.3% 53.4%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 3.25e-01 83.8% 78.0%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.50 34.0 3.67e-01 73.5% 89.3%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3230533 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 46.0 5.53e-01 77.9% 86.7%
4110878 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 47.0 5.50e-01 77.9% 100.0%
3188712 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.70 55.0 4.81e-01 83.8% 77.0%
3704395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.31e-01 79.4% 85.9%
2727964 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.69 47.0 5.03e-01 79.4% 83.1%
3924619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 52.0 4.28e-01 82.4% 46.7%
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 50.0 5.26e-01 77.9% 90.0%
4265943 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.67 50.0 3.26e-01 79.4% 19.7%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 50.0 3.71e-01 92.6% 30.6%
4947612 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 50.0 3.99e-01 80.9% 45.7%
4932404 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 50.0 3.83e-01 80.9% 38.1%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 50.0 5.04e-01 80.9% 88.6%
3342814 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 51.0 4.56e-01 82.4% 78.9%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.60e-01 76.5% 73.8%
165654 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.66 49.0 4.84e-01 80.9% 77.0%
3740221 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.66 49.0 3.75e-01 80.9% 39.4%
5032454 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 48.0 3.91e-01 80.9% 41.5%
4936914 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 49.0 4.22e-01 80.9% 54.3%
3329012 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.65 52.0 3.95e-01 86.8% 41.9%
3376465 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.64 50.0 3.78e-01 82.4% 43.2%
1117666 4.1.1.103 beta barrels › SH3 › SH3 › SH3 › SH3_12 0.64 48.0 4.44e-01 79.4% 77.6%
3821287 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.64 47.0 3.76e-01 79.4% 41.4%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.64 48.0 4.64e-01 82.4% 72.0%
3876680 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 48.0 4.24e-01 80.9% 56.0%
3433434 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.64 48.0 3.39e-01 80.9% 37.2%
3608562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 47.0 3.59e-01 79.4% 34.6%
3409460 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 48.0 4.12e-01 80.9% 54.3%
2978978 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 48.0 4.68e-01 82.4% 84.0%
3642926 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 54.0 4.03e-01 100.0% 72.4%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 46.0 4.11e-01 80.9% 70.0%
147797 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.62 48.0 4.82e-01 83.8% 85.3%
3185321 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.62 46.0 4.52e-01 80.9% 84.0%
2755606 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.62 46.0 3.26e-01 82.4% 40.0%
3714156 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 47.0 4.44e-01 83.8% 67.1%
3793656 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.61 53.0 4.20e-01 98.5% 69.7%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.61 46.0 4.31e-01 80.9% 72.9%
4272564 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.61 46.0 3.95e-01 80.9% 58.3%
3575581 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.61 45.0 3.48e-01 80.9% 38.2%
5063379 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.61 45.0 3.34e-01 85.3% 30.0%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 46.0 4.11e-01 80.9% 64.2%
4636051 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 46.0 3.97e-01 80.9% 61.0%
4024274 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.61 45.0 3.96e-01 80.9% 60.0%
3989353 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.60 44.0 3.68e-01 79.4% 100.0%
3477401 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.60 45.0 3.14e-01 82.4% 37.1%
3475240 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.60 41.0 4.54e-01 76.5% 89.1%
4255584 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 46.0 4.06e-01 82.4% 58.0%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.60 45.0 4.21e-01 80.9% 72.9%
3511375 4.1.1.349 beta barrels › SH3 › SH3 › SH3 › ROF 0.60 45.0 4.18e-01 85.3% 64.7%
4183853 4.1.1.435 beta barrels › SH3 › SH3 › SH3 › PF29216 0.60 44.0 4.40e-01 79.4% 85.7%
3289944 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.59 44.0 4.08e-01 80.9% 66.7%
3619619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.50e-01 86.8% 80.0%
5043979 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.46e-01 80.9% 82.9%
3281271 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.59 45.0 4.10e-01 80.9% 65.6%
3959770 4.31.1.0 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.59 44.0 4.07e-01 80.9% 68.9%
3712451 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 48.0 3.95e-01 89.7% 48.8%
3953109 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.59 44.0 3.98e-01 80.9% 65.3%
3286662 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.59 44.0 3.89e-01 80.9% 59.0%
3344796 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 48.0 4.54e-01 91.2% 84.3%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 44.0 4.01e-01 80.9% 67.8%
3738626 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.58 46.0 3.66e-01 88.2% 70.3%
4209798 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.58 43.0 4.05e-01 80.9% 74.1%
4031510 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 43.0 3.99e-01 80.9% 66.7%
5025498 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.58 43.0 3.97e-01 80.9% 68.9%
3972550 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 43.0 3.84e-01 80.9% 61.0%
4668960 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 42.0 3.69e-01 80.9% 57.3%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.57 43.0 3.71e-01 80.9% 57.3%
5010832 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.57 42.0 3.92e-01 80.9% 73.0%
4118552 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 42.0 4.11e-01 80.9% 73.3%
3398023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 44.0 3.33e-01 88.2% 33.7%
3687350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 39.0 4.17e-01 79.4% 90.9%
5051220 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 42.0 3.83e-01 82.4% 64.4%
3213725 1.1.17.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.54 42.0 2.81e-01 85.3% 21.9%
3188394 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.54 42.0 3.55e-01 88.2% 73.3%
5055172 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.52 36.0 3.87e-01 73.5% 89.1%
3436557 220.4.1.8 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › ZGRF1-like_N 0.52 37.0 3.70e-01 79.4% 93.3%
4581369 4.1.1.166 beta barrels › SH3 › SH3 › SH3 › DUF2314 0.52 38.0 3.46e-01 83.8% 72.4%
7765 4216.1.1.2 a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.52 38.0 3.23e-01 82.4% 66.7%
4068291 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.51 35.0 3.69e-01 73.5% 81.7%
4622062 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 37.0 2.69e-01 82.4% 32.8%
3602511 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 37.0 3.76e-01 85.3% 80.0%