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aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00238

Bact-Vir

aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00238

Identity

Kingdom:
phage

Quality

90.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-86
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 43.0 5.09e-01 75.0% 96.4%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.46e-01 72.6% 71.2%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.84e-01 94.0% 90.8%
3tfmA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 43.0 3.93e-01 70.2% 72.5%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 44.0 4.72e-01 73.8% 87.8%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.53e-01 84.5% 75.9%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 42.0 3.87e-01 70.2% 74.8%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.61 43.0 4.11e-01 72.6% 86.3%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.49e-01 73.8% 86.8%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 5.00e-01 86.9% 92.9%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.86e-01 82.1% 72.0%
4kfzA02 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.52 23.0 2.60e-01 90.5% 44.6%
2darA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.51 23.0 2.53e-01 91.7% 44.4%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.72 43.0 5.12e-01 89.3% 90.9%
3412900 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 47.0 4.25e-01 70.2% 79.1%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 44.0 4.52e-01 89.3% 76.2%
3888963 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 42.0 2.83e-01 70.2% 24.1%
3885516 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 42.0 3.86e-01 70.2% 76.4%
4096988 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 42.0 3.03e-01 70.2% 32.8%
3902990 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.62 51.0 5.08e-01 100.0% 87.8%
3870917 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 42.0 3.35e-01 70.2% 46.7%
2642957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.93e-01 82.1% 92.6%
3598271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.14e-01 92.9% 50.6%
1503651 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 44.0 4.50e-01 88.1% 78.8%
4025294 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.58 42.0 4.18e-01 76.2% 81.1%
3777241 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 51.0 4.68e-01 100.0% 86.4%
3995253 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.55 23.0 3.08e-01 90.5% 72.5%
3480569 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.53 24.0 3.07e-01 90.5% 88.6%
3617313 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.52 19.0 2.80e-01 88.1% 74.3%
3229152 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.51 22.0 2.94e-01 88.1% 77.1%
3824503 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.51 34.0 2.41e-01 70.2% 22.9%
4990542 377.1.1.128 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF2175 0.51 23.0 2.81e-01 90.5% 64.4%
3487870 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.50 22.0 2.88e-01 90.5% 72.5%
3559364 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.50 23.0 3.01e-01 88.1% 85.7%
3742454 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.50 23.0 2.98e-01 90.5% 82.9%
4940041 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.50 22.0 2.92e-01 89.3% 80.0%