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aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00266
Bact-Viraot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00266
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-186
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06527.17 best | TniQ | 59.7 | 6.90e-16 | 85.4% | 91.5% |
D2
high
residues 196-296
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6bfnB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.57 | 44.0 | 3.57e-01 | 83.2% | 91.6% |
| 3dxlA02 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.56 | 46.0 | 4.08e-01 | 90.1% | 77.0% |
| 2cw7A02 | 1.10.10.1010 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV | 0.56 | 47.0 | 4.24e-01 | 95.0% | 93.8% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.55 | 48.0 | 4.37e-01 | 98.0% | 98.5% |
| 1ij5A03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 37.0 | 3.43e-01 | 73.3% | 90.1% |
| 2yguC00 | 1.10.238.190 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.52 | 41.0 | 3.94e-01 | 88.1% | 97.5% |
| 3sp1A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 44.0 | 3.33e-01 | 97.0% | 79.0% |
| 2jnfA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.51 | 35.0 | 3.99e-01 | 95.0% | 98.6% |
| 3b0pA02 | 1.20.120.1460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.50 | 31.0 | 3.44e-01 | 92.1% | 81.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4949205 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.63 | 48.0 | 3.75e-01 | 82.2% | 71.6% |
| 4111395 | 3960.1.1.1 ↗ | alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › AadA_C | 0.58 | 43.0 | 4.27e-01 | 89.1% | 74.3% |
| 3920041 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 41.0 | 3.83e-01 | 76.2% | 80.0% |
| 4140739 | 1057.1.1.1 ↗ | a+b two layers › Endonuclease PI-TkoII domain IV › Endonuclease PI-TkoII domain IV › Endonuclease PI-TkoII domain IV › PI-TkoII_IV | 0.53 | 45.0 | 4.04e-01 | 98.0% | 91.3% |
| 3990091 | 601.18.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 | 0.52 | 36.0 | 3.92e-01 | 94.1% | 92.5% |
| 4946137 | 7524.1.1.3 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › LuxC | 0.51 | 42.0 | 3.23e-01 | 92.1% | 80.8% |
D3
high
residues 307-402
Domain cluster:
representative
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3729904 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.59 | 43.0 | 4.56e-01 | 97.9% | 85.9% |
| 4961338 | 2007.1.14.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like | 0.53 | 36.0 | 3.07e-01 | 99.0% | 40.6% |
| 3792674 | 101.1.2.303 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPC5 | 0.51 | 41.0 | 3.90e-01 | 85.4% | 86.4% |
| 5060888 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.50 | 43.0 | 4.29e-01 | 100.0% | 88.0% |