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aot2015-NO08_SRR1761682_USA_scaffold_4_curated_prodigal-single.1__X__X__00016
Bact-Viraot2015-NO08_SRR1761682_USA_scaffold_4_curated_prodigal-single.1__X__X__00016
Identity
- Kingdom:
- phage
Quality
41.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-58
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7d8gA01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.68 | 58.0 | 4.08e-01 | 100.0% | 68.9% |
| 2c0nA00 | 3.90.550.40 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.66 | 47.0 | 3.15e-01 | 75.5% | 64.7% |
| 1qhlA00 | 3.40.1140.10 | Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › | 0.65 | 43.0 | 2.85e-01 | 98.0% | 16.7% |
| 1lvoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 46.0 | 3.85e-01 | 79.6% | 85.2% |
| 2y23A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 45.0 | 3.58e-01 | 79.6% | 95.2% |
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.61 | 49.0 | 4.73e-01 | 89.8% | 94.7% |
| 3m4aA03 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.60 | 46.0 | 3.62e-01 | 89.8% | 61.9% |
| 1s68A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.60 | 49.0 | 3.83e-01 | 95.9% | 90.3% |
| 4gf0A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 40.0 | 3.27e-01 | 71.4% | 97.9% |
| 1jk4A00 | 2.60.9.10 | Mainly Beta › Sandwich › Neurophysin II; Chain A › Neurohypophysial hormone domain | 0.59 | 46.0 | 4.06e-01 | 100.0% | 57.0% |
| 7wffb01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.58 | 40.0 | 2.48e-01 | 73.5% | 14.6% |
| 3mmyA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 46.0 | 2.89e-01 | 100.0% | 52.8% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.56 | 47.0 | 3.13e-01 | 98.0% | 84.9% |
| 2kssA01 | 2.30.30.630 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 41.0 | 3.85e-01 | 81.6% | 98.4% |
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.55 | 43.0 | 2.77e-01 | 85.7% | 48.3% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.55 | 44.0 | 2.85e-01 | 100.0% | 33.9% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.55 | 40.0 | 3.33e-01 | 100.0% | 42.9% |
| 8f5pC01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 44.0 | 2.81e-01 | 98.0% | 35.5% |
| 4c2mA04 | 3.30.1490.180 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii | 0.54 | 34.0 | 3.00e-01 | 100.0% | 39.0% |
| 1ae2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 38.0 | 3.22e-01 | 75.5% | 66.3% |
| 1hdiA01 | 3.40.50.1260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain | 0.54 | 46.0 | 3.17e-01 | 100.0% | 51.4% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 36.0 | 2.99e-01 | 71.4% | 38.0% |
| 1x05A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 40.0 | 3.20e-01 | 95.9% | 62.0% |
| 4fnfA00 | 2.40.50.50 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 38.0 | 3.14e-01 | 81.6% | 54.1% |
| 6njeA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.51 | 42.0 | 2.59e-01 | 91.8% | 55.9% |
| 4in3B00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 44.0 | 2.51e-01 | 100.0% | 14.1% |
| 1t95A01 | 3.30.1250.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical 12.0 Kda Protein In Nam8-gar1 Intergenic Region; Chain: A; › Ribosome maturation protein SBDS, N-terminal domain | 0.51 | 37.0 | 3.30e-01 | 83.7% | 100.0% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.51 | 35.0 | 2.70e-01 | 73.5% | 66.7% |
| 8dc1A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 45.0 | 2.85e-01 | 100.0% | 64.0% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 44.0 | 4.13e-01 | 100.0% | 78.0% |
| 1nrvA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 37.0 | 3.02e-01 | 79.6% | 40.0% |
| 3kuzB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 39.0 | 3.19e-01 | 91.8% | 92.7% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3441818 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.68 | 46.0 | 4.50e-01 | 71.4% | 65.5% |
| 3974474 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.65 | 47.0 | 3.84e-01 | 98.0% | 42.2% |
| 3988677 | 3696.1.1.4 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › SNF2_assoc | 0.65 | 53.0 | 4.23e-01 | 91.8% | 50.0% |
| 3812322 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 43.0 | 3.75e-01 | 71.4% | 51.2% |
| 3969322 | 6016.1.1.1 ↗ | a+b two layers › Domain 1 of outer membrane lipoprotein Wza › Domain 1 of outer membrane lipoprotein Wza › Domain 1 of outer membrane lipoprotein Wza › Poly_export | 0.63 | 44.0 | 3.87e-01 | 77.6% | 66.3% |
| 3987902 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.62 | 42.0 | 4.37e-01 | 79.6% | 80.0% |
| 3787728 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.60 | 34.0 | 3.05e-01 | 100.0% | 37.1% |
| 3697648 | 5.1.4.267 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF28639 | 0.59 | 49.0 | 2.90e-01 | 100.0% | 47.6% |
| 4945146 | 242.2.1.0 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like | 0.58 | 40.0 | 4.02e-01 | 73.5% | 86.0% |
| 3241718 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 48.0 | 3.11e-01 | 100.0% | 39.3% |
| 3601003 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 48.0 | 2.81e-01 | 100.0% | 57.8% |
| 3276162 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.57 | 46.0 | 3.14e-01 | 95.9% | 78.1% |
| 4012130 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.57 | 45.0 | 2.57e-01 | 85.7% | 17.3% |
| 3190184 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.57 | 45.0 | 3.82e-01 | 95.9% | 67.4% |
| 4979528 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.57 | 49.0 | 4.03e-01 | 100.0% | 55.8% |
| 3248628 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 46.0 | 2.89e-01 | 98.0% | 43.0% |
| 3971219 | 11.9.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase | 0.57 | 47.0 | 3.05e-01 | 95.9% | 94.8% |
| 4172704 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.57 | 43.0 | 4.19e-01 | 85.7% | 92.7% |
| 3590813 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.56 | 42.0 | 4.22e-01 | 83.7% | 88.0% |
| 3572850 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.56 | 46.0 | 2.82e-01 | 95.9% | 19.7% |
| 3706091 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.56 | 44.0 | 2.88e-01 | 87.8% | 65.0% |
| 3296813 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.56 | 44.0 | 3.29e-01 | 91.8% | 95.0% |
| 4319097 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 39.0 | 3.73e-01 | 75.5% | 86.2% |
| 4407103 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.55 | 39.0 | 3.66e-01 | 100.0% | 61.7% |
| 376 | 2.1.1.20 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Phage_DNA_bind | 0.55 | 38.0 | 3.22e-01 | 75.5% | 65.5% |
| 4569699 | 2002.1.1.61 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MS_TIM-barrel,MS_N,MSG_insertion,MS_C | 0.54 | 40.0 | 2.27e-01 | 85.7% | 34.2% |
| 4000297 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.54 | 39.0 | 2.34e-01 | 95.9% | 11.2% |
| 5081569 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.53 | 35.0 | 2.75e-01 | 85.7% | 33.0% |
| 5013239 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.53 | 39.0 | 3.30e-01 | 93.9% | 61.8% |
| 3744650 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 36.0 | 3.27e-01 | 75.5% | 50.0% |
| 4084742 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.53 | 39.0 | 3.04e-01 | 93.9% | 93.3% |
| 4026296 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.53 | 39.0 | 2.38e-01 | 95.9% | 12.9% |
| 1948726 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 36.0 | 2.34e-01 | 75.5% | 18.4% |
| 4025931 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.51 | 36.0 | 2.69e-01 | 98.0% | 28.5% |
| 4975657 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.51 | 44.0 | 2.87e-01 | 100.0% | 85.1% |
| 5079443 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.51 | 42.0 | 3.17e-01 | 95.9% | 37.7% |
| 3614888 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.51 | 35.0 | 2.88e-01 | 100.0% | 35.2% |
| 4030565 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 39.0 | 2.52e-01 | 100.0% | 40.9% |