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aot2015-NO08_SRR1761682_USA_scaffold_4_curated_prodigal-single.1__X__X__00059

Bact-Vir

aot2015-NO08_SRR1761682_USA_scaffold_4_curated_prodigal-single.1__X__X__00059

Identity

Kingdom:
phage

Quality

84.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-56
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 64.0 5.27e-01 94.5% 59.2%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 62.0 5.24e-01 92.7% 68.1%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.74 62.0 5.48e-01 100.0% 63.3%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.74 52.0 4.17e-01 74.5% 68.6%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.72 50.0 3.71e-01 72.7% 47.9%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 5.14e-01 90.9% 61.4%
4bwcA02 1.10.439.20 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 0.72 51.0 3.92e-01 74.5% 88.0%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 62.0 5.10e-01 100.0% 56.3%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 5.30e-01 92.7% 71.6%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.82e-01 94.5% 64.8%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.95e-01 92.7% 73.8%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 5.05e-01 92.7% 74.6%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.32e-01 92.7% 51.7%
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 56.0 5.13e-01 98.2% 81.6%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 4.76e-01 94.5% 61.6%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 5.03e-01 94.5% 78.3%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.74e-01 92.7% 69.7%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.11e-01 94.5% 46.9%
1ni5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.65 46.0 4.00e-01 74.5% 47.7%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 53.0 4.83e-01 94.5% 85.3%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 4.82e-01 92.7% 79.3%
1v1gA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 51.0 3.56e-01 94.5% 34.0%
1sv0D00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.61 43.0 3.80e-01 94.5% 50.6%
1bg1A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 53.0 4.13e-01 100.0% 52.5%
1y7rA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 42.0 3.29e-01 100.0% 31.8%
2be4A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 49.0 4.15e-01 100.0% 52.5%
1biaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 36.0 3.42e-01 80.0% 51.6%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 42.0 3.71e-01 81.8% 57.6%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.95e-01 94.5% 60.0%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 2.91e-01 87.3% 28.3%
3jtgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.05e-01 100.0% 70.6%
4yo2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.80e-01 96.4% 64.8%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.55 44.0 3.24e-01 87.3% 43.4%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.54 48.0 3.75e-01 100.0% 87.1%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 35.0 3.21e-01 78.2% 48.7%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.52 39.0 3.63e-01 96.4% 61.8%
1i12D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 44.0 3.27e-01 100.0% 40.1%
3qphA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 3.01e-01 92.7% 41.2%
3bwgB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.51e-01 96.4% 66.7%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3955723 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.94 68.0 7.17e-01 94.5% 84.0%
3960483 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.92 64.0 6.72e-01 90.9% 80.0%
3953197 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.91 66.0 5.39e-01 94.5% 44.2%
3281256 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.91 66.0 5.74e-01 94.5% 52.5%
4974775 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.85 61.0 5.99e-01 94.5% 70.0%
3604634 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.84 67.0 6.52e-01 94.5% 80.0%
3224502 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.83 54.0 5.45e-01 72.7% 67.3%
3982565 101.1.1.202 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.83 59.0 5.92e-01 87.3% 74.5%
5074322 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 71.0 6.19e-01 94.5% 67.1%
4205244 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.80 61.0 5.45e-01 85.5% 60.0%
5011183 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.78 65.0 5.23e-01 94.5% 55.5%
4980135 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 66.0 5.28e-01 94.5% 52.8%
4503351 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.78 64.0 5.22e-01 92.7% 57.1%
4966192 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.78 65.0 5.15e-01 94.5% 53.9%
5052010 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 66.0 5.82e-01 94.5% 71.2%
4173782 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.77 65.0 5.11e-01 94.5% 53.0%
4487383 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.77 66.0 5.27e-01 96.4% 58.2%
5072225 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 60.0 5.86e-01 85.5% 76.7%
4284507 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.77 66.0 5.34e-01 96.4% 59.0%
4943354 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 64.0 5.73e-01 94.5% 72.2%
4928669 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 64.0 5.23e-01 96.4% 56.2%
4974161 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 63.0 4.89e-01 94.5% 50.0%
5073929 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 63.0 5.08e-01 94.5% 55.5%
4109840 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 64.0 5.25e-01 94.5% 64.0%
4373647 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 63.0 4.93e-01 94.5% 50.8%
5003874 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 64.0 5.01e-01 96.4% 52.5%
3636754 101.1.2.466 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_MCM3_C 0.76 66.0 5.79e-01 100.0% 66.3%
4314672 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.75 63.0 5.06e-01 92.7% 57.1%
4976651 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 62.0 5.80e-01 92.7% 80.0%
5045315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 67.0 5.22e-01 100.0% 52.2%
5027116 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.75 62.0 4.98e-01 96.4% 53.9%
4948099 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 65.0 5.22e-01 100.0% 60.9%
4956520 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 65.0 5.21e-01 98.2% 58.2%
3350223 4207.1.1.0 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) 0.74 47.0 3.81e-01 72.7% 34.3%
5055466 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 64.0 5.11e-01 100.0% 53.9%
5000349 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 61.0 4.82e-01 94.5% 53.3%
5065786 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 61.0 4.79e-01 94.5% 50.0%
5071094 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 65.0 5.76e-01 100.0% 71.2%
4933997 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 62.0 4.81e-01 94.5% 50.8%
4955909 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 64.0 5.14e-01 100.0% 55.5%
5005164 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 62.0 4.96e-01 94.5% 59.3%
4982781 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 63.0 5.08e-01 100.0% 54.5%
5050129 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 64.0 5.10e-01 100.0% 60.9%
3875839 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 64.0 5.04e-01 100.0% 53.9%
4961270 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 63.0 5.14e-01 100.0% 62.9%
3927517 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 63.0 5.21e-01 100.0% 64.0%
4990676 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 62.0 4.99e-01 100.0% 60.0%
5035389 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 59.0 5.13e-01 94.5% 60.0%
3625612 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 62.0 5.12e-01 100.0% 63.0%
3701463 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.71 57.0 5.05e-01 92.7% 60.0%
4973290 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 5.47e-01 92.7% 78.6%
3954610 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 5.47e-01 98.2% 73.3%
3598367 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 4.84e-01 92.7% 57.0%
5081315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 5.42e-01 98.2% 80.0%
4982553 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 56.0 4.62e-01 100.0% 48.6%
3576823 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.69 56.0 4.36e-01 92.7% 41.1%
4325040 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 59.0 4.58e-01 100.0% 55.4%
5029778 101.1.2.43 ↗ alpha arrays › HTH › HTH › winged helix domain › Pox_D5 0.69 58.0 4.99e-01 96.4% 70.0%
None — 0.69 60.0 4.96e-01 100.0% 62.0%
3927474 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.69 55.0 4.81e-01 92.7% 59.6%
3688358 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.69 57.0 5.10e-01 94.5% 76.2%
3649376 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 59.0 4.38e-01 100.0% 42.0%
4525548 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 4.66e-01 92.7% 51.0%
5044829 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 4.72e-01 94.5% 54.0%
2097968 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.68 57.0 5.02e-01 94.5% 64.6%
2898920 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.68 59.0 4.45e-01 100.0% 53.6%
3938377 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.68 58.0 5.07e-01 98.2% 68.2%
3605279 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 58.0 4.15e-01 100.0% 33.7%
4012878 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 4.51e-01 98.2% 53.0%
3729476 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.66 56.0 4.48e-01 98.2% 53.0%
4031678 101.1.2.20 ↗ alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.66 54.0 5.12e-01 92.7% 76.9%
3177239 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.65 55.0 4.24e-01 98.2% 45.2%
3313301 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.65 54.0 4.72e-01 94.5% 75.3%
3883278 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.65 54.0 4.59e-01 96.4% 65.3%
3555794 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.65 54.0 4.71e-01 94.5% 76.5%
5000306 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 55.0 4.81e-01 100.0% 64.7%
3304542 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.64 54.0 4.53e-01 96.4% 68.4%
4967393 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 4.77e-01 94.5% 75.7%
3817098 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.63 43.0 2.83e-01 72.7% 44.7%
5016400 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.63 53.0 3.51e-01 100.0% 89.4%
3392399 2004.1.1.139 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Torsin 0.62 54.0 3.44e-01 100.0% 77.9%
4928394 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 4.29e-01 92.7% 78.8%
5030252 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 40.0 3.48e-01 92.7% 51.0%