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aot2015-NO08_SRR1761682_USA_scaffold_4_curated_prodigal-single.1__X__X__00065
Bact-Viraot2015-NO08_SRR1761682_USA_scaffold_4_curated_prodigal-single.1__X__X__00065
Identity
- Kingdom:
- phage
Quality
40.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 647-718
D2
high
residues 1829-1904
D3
medium
residues 132-173_192-330
D4
medium
residues 424-519
D5
medium
residues 520-646
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kreA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.71 | 38.0 | 3.00e-01 | 70.1% | 25.7% |
| 4wyqB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 37.0 | 4.59e-01 | 70.1% | 92.0% |
| 7kx7A03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.65 | 34.0 | 2.88e-01 | 73.2% | 29.3% |
| 4u3tB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 36.0 | 2.73e-01 | 71.7% | 25.8% |
| 2if7B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 31.0 | 3.62e-01 | 72.4% | 82.8% |
| 1y6zA01 | 3.30.230.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.52 | 29.0 | 2.74e-01 | 75.6% | 41.0% |
| 1ex0A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 29.0 | 3.24e-01 | 74.8% | 71.6% |
| 1z5bB03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.51 | 37.0 | 3.51e-01 | 74.0% | 65.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3484954 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.65 | 46.0 | 3.59e-01 | 73.2% | 37.8% |
| 2987310 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 36.0 | 3.91e-01 | 70.1% | 63.9% |
| 3488139 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.64 | 47.0 | 3.91e-01 | 75.6% | 49.3% |
| 3017675 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 37.0 | 4.60e-01 | 73.2% | 96.0% |
| 3711065 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.59 | 36.0 | 3.81e-01 | 71.7% | 67.8% |
| None | — | 0.59 | 33.0 | 3.55e-01 | 74.8% | 62.7% | |
| 3267746 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.58 | 35.0 | 4.16e-01 | 71.7% | 90.6% |
| 1319990 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.56 | 51.0 | 3.49e-01 | 100.0% | 86.7% |
| 4066295 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.56 | 50.0 | 3.42e-01 | 98.4% | 87.0% |
| 3571722 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 4.58e-01 | 93.7% | 93.3% |
| 4023996 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.53 | 37.0 | 3.31e-01 | 73.2% | 100.0% |
| 3388343 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.52 | 45.0 | 3.17e-01 | 95.3% | 87.1% |
| 3608101 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 36.0 | 4.03e-01 | 70.9% | 93.7% |
| 1841134 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.51 | 47.0 | 3.17e-01 | 100.0% | 85.9% |