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aot2015-NO08_SRR1761682_USA_scaffold_4_curated_prodigal-single.1__X__X__00066
Bact-Viraot2015-NO08_SRR1761682_USA_scaffold_4_curated_prodigal-single.1__X__X__00066
Identity
- Kingdom:
- phage
Quality
66.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 396-570
Domain cluster:
rep: NC_070877.1__YP_010660374.1__PP914_gp008__00008__D5-138
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01551.30 best | Peptidase_M23 | 33.3 | 6.20e-08 | 71.4% | 99.0% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hsiB02 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.89 | 65.0 | 7.13e-01 | 100.0% | 89.7% |
| 4bh5A00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.87 | 61.0 | 7.13e-01 | 88.6% | 96.9% |
| 6jn7A01 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.85 | 67.0 | 6.76e-01 | 100.0% | 81.1% |
| 2gu1A03 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.84 | 61.0 | 6.98e-01 | 87.4% | 97.0% |
| 7qrlA01 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.83 | 60.0 | 6.88e-01 | 88.6% | 95.6% |
| 1qwyA02 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.75 | 64.0 | 6.52e-01 | 100.0% | 90.7% |
| 3csqA02 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.75 | 58.0 | 6.04e-01 | 88.6% | 85.4% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.62 | 23.0 | 3.92e-01 | 91.4% | 100.0% |
| 1hpwA00 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.57 | 35.0 | 4.01e-01 | 100.0% | 82.9% |
| 1lshA03 | 2.20.50.20 | Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 | 0.54 | 29.0 | 3.75e-01 | 96.6% | 90.8% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 24.0 | 3.49e-01 | 77.7% | 94.5% |
| 2wraA00 | 2.60.120.400 | Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin | 0.50 | 28.0 | 3.35e-01 | 72.6% | 78.7% |
| 4boeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 25.0 | 2.71e-01 | 99.4% | 53.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3966112 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.87 | 69.0 | 6.93e-01 | 100.0% | 81.1% |
| None | — | 0.86 | 62.0 | 7.09e-01 | 88.6% | 95.6% | |
| 3387971 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.85 | 63.0 | 6.37e-01 | 89.1% | 75.4% |
| 3974471 | 325.1.6.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif | 0.85 | 61.0 | 6.98e-01 | 89.1% | 94.8% |
| 3385726 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.85 | 70.0 | 6.39e-01 | 100.0% | 67.3% |
| 2573963 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.85 | 67.0 | 6.58e-01 | 100.0% | 76.3% |
| 3386468 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.85 | 60.0 | 6.17e-01 | 85.1% | 75.8% |
| 3388302 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.84 | 58.0 | 6.82e-01 | 86.9% | 97.6% |
| 2774289 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.84 | 61.0 | 6.31e-01 | 88.6% | 79.1% |
| 4034361 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.81 | 56.0 | 6.38e-01 | 87.4% | 91.1% |
| 5004816 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.78 | 66.0 | 6.67e-01 | 87.4% | 97.1% |
| 3961687 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.75 | 63.0 | 5.90e-01 | 86.9% | 96.2% |
| 4941596 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.75 | 63.0 | 6.33e-01 | 86.3% | 94.9% |
| 1173319 | 325.1.6.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif | 0.74 | 57.0 | 5.95e-01 | 85.1% | 84.6% |
| 5073481 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.73 | 62.0 | 5.73e-01 | 88.6% | 95.9% |
| 4931567 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.71 | 61.0 | 5.96e-01 | 89.1% | 93.2% |
| 3229193 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.71 | 58.0 | 6.18e-01 | 86.9% | 95.5% |
| 1394279 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.71 | 58.0 | 6.05e-01 | 87.4% | 90.7% |
| 2774531 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.70 | 58.0 | 5.94e-01 | 86.3% | 94.1% |
| 4995993 | 325.1.6.9 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PF26482 | 0.68 | 46.0 | 5.34e-01 | 76.6% | 96.0% |
| 3283166 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.66 | 62.0 | 5.27e-01 | 100.0% | 81.1% |
| 3232476 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 28.0 | 3.57e-01 | 71.4% | 89.0% |
D2
medium
residues 3-148
D3
medium
residues 159-206_218-268_320-374
D4
medium
residues 207-217_269-319
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.63 | 41.0 | 2.99e-01 | 79.0% | 23.3% |
| 4bwiB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.61 | 49.0 | 3.55e-01 | 90.3% | 97.3% |
| 1f8vC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 43.0 | 2.75e-01 | 82.3% | 15.4% |
| 3igzB01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.57 | 46.0 | 3.06e-01 | 96.8% | 72.8% |
| 7ze1A01 | 2.60.40.1520 | Mainly Beta › Sandwich › Immunoglobulin-like › Hemocyanin, C-terminal domain | 0.57 | 41.0 | 2.90e-01 | 85.5% | 22.3% |
| 1xezA03 | 6.20.40.20 | Special › Other non-globular › Porin MspA ribbon fold › Leukocidin/Hemolysin toxin, pre-stem domain | 0.56 | 34.0 | 3.80e-01 | 82.3% | 79.2% |
| 4dzdA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.56 | 42.0 | 3.50e-01 | 87.1% | 74.8% |
| 3cslA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.55 | 43.0 | 2.49e-01 | 87.1% | 8.6% |
| 5h9fJ00 | 3.30.70.2660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 44.0 | 3.04e-01 | 90.3% | 47.0% |
| 3oc9A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.54 | 44.0 | 2.79e-01 | 96.8% | 41.5% |
| 2wxwA02 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.53 | 47.0 | 3.24e-01 | 100.0% | 63.8% |
| 1r4sA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.52 | 42.0 | 2.84e-01 | 98.4% | 23.8% |
| 5troA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 39.0 | 2.59e-01 | 87.1% | 48.1% |
| 3gw6A03 | 3.30.2460.10 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain | 0.51 | 34.0 | 3.50e-01 | 77.4% | 73.7% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.51 | 38.0 | 3.72e-01 | 90.3% | 72.7% |
| 2yxdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 42.0 | 3.04e-01 | 93.5% | 89.9% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965661 | 327.7.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C | 0.78 | 52.0 | 4.68e-01 | 82.3% | 50.6% |
| 4027928 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.66 | 57.0 | 3.95e-01 | 100.0% | 42.7% |
| 3563069 | 1086.1.1.5 ↗ | beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › EMI | 0.64 | 44.0 | 5.06e-01 | 74.2% | 100.0% |
| 3939681 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.61 | 42.0 | 2.63e-01 | 74.2% | 13.6% |
| 4022277 | 328.1.1.3 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 | 0.60 | 52.0 | 4.27e-01 | 95.2% | 84.1% |
| 3421099 | 225.1.1.2 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HSP90,HATPase_c_3 | 0.60 | 45.0 | 2.97e-01 | 80.6% | 32.5% |
| 5019455 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 46.0 | 3.25e-01 | 85.5% | 85.1% |
| 4930176 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.59 | 52.0 | 3.39e-01 | 100.0% | 61.3% |
| 3192453 | 7541.1.1.1 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth | 0.59 | 52.0 | 3.55e-01 | 100.0% | 40.0% |
| 3387999 | 2003.2.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 | 0.58 | 49.0 | 3.35e-01 | 93.5% | 53.2% |
| 4961086 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.57 | 46.0 | 3.44e-01 | 90.3% | 51.8% |
| 3675745 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.57 | 52.0 | 4.89e-01 | 100.0% | 86.3% |
| 3618241 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.57 | 48.0 | 4.07e-01 | 95.2% | 76.2% |
| 4994610 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.57 | 34.0 | 2.83e-01 | 85.5% | 32.2% |
| 3881351 | 2484.1.1.39 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble | 0.56 | 45.0 | 3.26e-01 | 87.1% | 45.6% |
| 3797470 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.56 | 48.0 | 3.96e-01 | 95.2% | 72.7% |
| 4950334 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.54 | 47.0 | 3.09e-01 | 100.0% | 60.0% |
| 5003060 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 3.34e-01 | 100.0% | 90.6% |
| 3942393 | 2004.1.1.173 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TrwB_AAD_bind | 0.54 | 45.0 | 2.80e-01 | 100.0% | 93.1% |
| 4013454 | 2003.6.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like | 0.54 | 39.0 | 2.46e-01 | 82.3% | 50.4% |
| 4230774 | 101.1.9.117 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc | 0.53 | 33.0 | 2.99e-01 | 82.3% | 40.0% |
| 1155879 | 825.1.1.0 ↗ | beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins | 0.53 | 42.0 | 3.02e-01 | 100.0% | 34.7% |
| 4109123 | 2484.1.1.27 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA | 0.52 | 38.0 | 2.66e-01 | 79.0% | 40.0% |
| 3719123 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.52 | 42.0 | 2.76e-01 | 98.4% | 41.7% |
| 4032204 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.52 | 37.0 | 2.29e-01 | 75.8% | 30.9% |
| 4435043 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.52 | 37.0 | 2.29e-01 | 75.8% | 30.8% |
| 3587268 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 42.0 | 3.56e-01 | 98.4% | 64.2% |
| 4137861 | 5054.1.1.7 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › KdpA | 0.52 | 38.0 | 3.06e-01 | 80.6% | 61.5% |
| 3739165 | 2004.1.1.176 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp | 0.50 | 40.0 | 2.89e-01 | 95.2% | 43.1% |