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aot2015-NO08_SRR1761682_USA_scaffold_4_curated_prodigal-single.1__X__X__00112
Bact-Viraot2015-NO08_SRR1761682_USA_scaffold_4_curated_prodigal-single.1__X__X__00112
Identity
- Kingdom:
- phage
Quality
88.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 90-229
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hlbA00 | 3.30.70.2960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 33.0 | 3.95e-01 | 86.4% | 67.4% |
| 4mh4A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.65 | 23.0 | 2.85e-01 | 74.3% | 46.8% |
| 2zyzB02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.63 | 27.0 | 3.25e-01 | 88.6% | 56.8% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.62 | 38.0 | 3.32e-01 | 100.0% | 39.3% |
| 3sm4A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.58 | 36.0 | 3.13e-01 | 100.0% | 39.1% |
| 3m7vA02 | 3.30.70.1250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phosphopentomutase | 0.57 | 28.0 | 3.05e-01 | 86.4% | 51.2% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 21.0 | 2.89e-01 | 87.1% | 67.7% |
| 2dirA01 | 3.30.2300.10 | Alpha Beta › 2-Layer Sandwich › THUMP fold › THUMP superfamily | 0.54 | 24.0 | 3.03e-01 | 85.0% | 66.7% |
| 2ql8A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.53 | 23.0 | 2.35e-01 | 80.7% | 34.3% |
| 3up6A02 | 2.60.40.3380 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 26.0 | 2.56e-01 | 92.1% | 39.7% |
| 4jneA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.52 | 27.0 | 3.27e-01 | 90.0% | 76.1% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 39.0 | 3.52e-01 | 79.3% | 87.2% |
| 2jzxA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.50 | 20.0 | 2.54e-01 | 86.4% | 57.0% |
| 4oiyA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.50 | 25.0 | 3.07e-01 | 97.9% | 76.5% |
| 2w3qA02 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.50 | 38.0 | 3.58e-01 | 88.6% | 66.5% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081637 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.73 | 38.0 | 3.79e-01 | 95.0% | 49.0% |
| 865573 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.72 | 37.0 | 3.69e-01 | 93.6% | 46.7% |
| 2511871 | 2492.1.1.26 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like | 0.69 | 33.0 | 3.03e-01 | 91.4% | 34.6% |
| 4667311 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.69 | 37.0 | 4.06e-01 | 91.4% | 63.5% |
| 3954245 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.68 | 37.0 | 3.99e-01 | 89.3% | 61.9% |
| 4208554 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.68 | 35.0 | 3.89e-01 | 88.6% | 60.9% |
| 3588071 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 40.0 | 3.87e-01 | 99.3% | 51.2% |
| 3969697 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 40.0 | 3.88e-01 | 99.3% | 53.5% |
| 3668779 | 2492.1.1.26 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like | 0.65 | 32.0 | 2.86e-01 | 91.4% | 33.7% |
| 4955135 | 2008.1.1.159 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 | 0.65 | 37.0 | 2.89e-01 | 100.0% | 25.2% |
| 3455742 | 284.2.1.2 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › DUF8223 | 0.64 | 30.0 | 4.12e-01 | 85.7% | 92.3% |
| 4947565 | 2008.1.1.159 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 | 0.64 | 37.0 | 2.86e-01 | 100.0% | 25.2% |
| 4394279 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.64 | 36.0 | 3.89e-01 | 90.0% | 64.2% |
| 4990951 | 3535.1.1.0 ↗ | a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 | 0.63 | 32.0 | 3.27e-01 | 91.4% | 47.4% |
| 424674 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.63 | 38.0 | 3.23e-01 | 100.0% | 36.7% |
| 4619777 | 5104.1.1.2 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45 | 0.63 | 39.0 | 3.78e-01 | 92.9% | 55.5% |
| 4392521 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.62 | 47.0 | 3.70e-01 | 100.0% | 38.2% |
| 2420866 | 2492.1.1.19 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › STIL_N | 0.62 | 34.0 | 3.20e-01 | 90.0% | 42.2% |
| 4943737 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 37.0 | 3.54e-01 | 97.1% | 50.6% |
| 4010258 | 2008.1.1.58 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 | 0.62 | 38.0 | 3.13e-01 | 100.0% | 32.5% |
| 5043227 | 2008.1.1.159 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 | 0.61 | 36.0 | 2.85e-01 | 100.0% | 27.0% |
| 4247735 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.61 | 38.0 | 2.37e-01 | 100.0% | 10.9% |
| 3935806 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.60 | 29.0 | 2.55e-01 | 92.1% | 31.0% |
| 3242671 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.60 | 30.0 | 2.61e-01 | 89.3% | 29.8% |
| 3927338 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.59 | 29.0 | 2.10e-01 | 91.4% | 16.2% |
| None | — | 0.58 | 38.0 | 3.08e-01 | 100.0% | 34.7% | |
| 3976411 | 2008.1.1.58 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 | 0.58 | 36.0 | 3.00e-01 | 100.0% | 34.3% |
| 5033908 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.57 | 37.0 | 3.24e-01 | 100.0% | 43.4% |
| 4329875 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.57 | 34.0 | 3.63e-01 | 91.4% | 66.4% |
| 5058147 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.56 | 29.0 | 3.26e-01 | 88.6% | 63.8% |
| 5012280 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.56 | 35.0 | 3.13e-01 | 100.0% | 43.4% |
| 3937781 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.56 | 30.0 | 2.70e-01 | 89.3% | 34.6% |
| 3242647 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.55 | 29.0 | 2.63e-01 | 92.1% | 34.0% |
| 4468301 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.54 | 33.0 | 3.57e-01 | 92.1% | 71.7% |
D2
medium
residues 38-89
Domain cluster:
representative